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  3. RAFL09-47-C24

RAFL09-47-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17753)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-C24 - full reading 
GACATAAAGA TTCCTAGTCT TATACTCTGT CTCTCTCTCT CTCTCTCTTT 
TTCACACTCA CACACAAACT AAACCGGAAT GGCCACCGCC GACGAATTCT 
CCGACGAAGA TACATCACCG ATTGAAGAAG TCCGTTTAAC GGTAACAAAC 
ACCGACGATC CAACACTACC GGTTTGGACA TTCAGGATGT GGTTCTTGGG 
TCTAATCTCA TGTTCTCTCC TCTCTTTCCT TAACCAATTC TTCTCGTACC 
GAACCGAACC GCTCGTAATC ACTCAAATCA CGGTTCAGGT GGCTACACTA 
CCTATCGGTC ATTTCTTGGC CAAGGTGCTT CCCAAAACCC GGTTTGGGTT 
ACCCGGTTGT GGATCGGCCC GGTTCTCGCT GAACCCGGGT CCGTTTAACA 
TGAAAGAGCA TGTTTTGATA TCGATATTTG CGAATGCGGG TAGTGCTTTC 
GGATCCGGGT CGGCTTATGC GGTTGGTATC ATCACAATTA TTAAAGCTTT 
TTATGGCCGG AGTATCTCTT TTATTGCCGG CTGGCTCCTC ATCATCACTA 
CACAGGTATT GGGATATGGC TGGGCCGGTT TACTGAGGAA ATATGTGGTC 
GAACCGGCTC ATATGTGGTG GCCTAGCACT CTGGTTCAAG TGTCACTGTT 
TAGGGCATTG CATGAGAAGG ACGACCAAAG GATGACGAGA GCAAAATTCT 
TTGTGATAGC ATTAGTCTGT AGTTTTGGAT GGTACATAGT CCCTGGCTAT 
CTCTTCACAA CACTCACAAG CATCTCATGG GTTTGTTGGG CATTTCCAAG 
ATCAGTCACT GCTCAACAGA TTGGTTCTGG AATGAGAGGT CTTGGTCTTG 
GAGCCTTTAC ACTAGACTGG ACCGCGGTTG CCTCTTTCTT GTTTAGTCCA 
CTTATCAGCC CCTTCTTCGC CATCGCTAAT GTTTTCATCG GTTATGTTCT 
TTTGATCTAC TTCGTCTTGC CTTTAGCCTA TTGGGGATTT GATTCTTATA 
ACGCTACGAG GTTTCCTATA TTTTCGTCGC ATCTTTTCAC ATCGGTTGGT 
AATACATATG ATATTCCTGC GATCGTGAAT GATAACTTTG AGCTCGATTT 
AGCTAAGTAT GAGCAACAAG GAAGGATTAA CTTGAGCATG TTCTTTGCTC 
TTACCTATGG GCTTGGTTTC GCCACCATTG CTTCTACGCT CACTCATGTA 
GCTCTCTTCT ATGGCAAGGA AATTTCTGAG AGGTTTCGAG TTTCATACAA 
AGGCAAGGAA GATATACACA CTAGGTTAAT GAAGAGATAT AAAGACATAC 
CTTCATGGTG GTTTTACTCA ATGTTGGCTG CGACACTACT TATCTCTCTT 
GCATTATGTG TTTTCTTGAA CGATGAGGTT CAAATGCCTT GGTGGGGACT 
TGTGTTCGCA AGCGCGATGG CTTTCGTCTT CACACTCCCG ATAAGCATCA 
TAACCGCAAC AACTAACCAA ACACCGGGAT TGAATATAAT AACAGAGTAC 
GCAATGGGAC TCATTTACCC GGGACGACCT ATCGCAAACG TATGCTTCAA 
AGTCTATGGA TACATGAGTA TGGCACAAGC AGTCTCTTTC TTAAATGACT 
TCAAACTTGG TCATTACATG AAGATCCCAC CTAGATCCAT GTTCTTGGTT 
CAATTCATCG GTACAATTCT TGCCGGAACA ATCAACATAA CGGTCGCATG 
GTGGCAGTTA AACTCTATCA AAAACATATG TCAAGAGGAA CTTCTACCTC 
CCAACAGTCC ATGGACATGT CCGGGTGACC GTGTTTTCTT CGATGCATCG 
GTCATTTGGG GATTGGTCGG ACCAAAACGG ATTTTTGGTT CTCAGGGAAA 
CTATGCGGCC ATGAACTGGT TTTTCCTCGG AGGTGCATTA GGACCAGTCA 
TAGTGTGGTC ATTGCACAAA GCGTTCCCAA AACGTTCTTG GATTCCACTT 
GTAAATCTCC CTGTTCTTCT AGGAGCAACC GCAATGATGC CACCTGCGAC 
CGCGGTGAAC TACAACTCGT GGATATTGGT GGGGACGATA TTCAACTTGT 
TTGTGTTCCG GTACAGGAAA AGTTGGTGGC AGAGGTATAA CTACGTTCTC 
TCAGCCGCTA TGGATGCCGG TGTAGCTTTC ATGGCGGTTT TGTTGTACTT 
CTCGGTGGGG ATGGAGGAAA AGAGTTTGGA CTGGTGGGGA ACAAGAGGTG 
AACATTGTGA TCTAGCTAAA TGTCCAACCG CTAGAGGAGT AATTGTTGAT 
GGTTGTCCGG TTAAATAATC TTAAAGGATC CATTGGTGTG TTTCGAAAAA 
AAAAA

Gene models with high sequence identity

  1. AT5G64410.1 [+] show detail - oligopeptide transporter 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Tetrapeptide transporter, OPT1/isp4 7.3e-174
HMMTigr Oligopeptide transporter OPT superfamily 3.7e-188
HMMPanther ISP4 LIKE PROTEIN 1.2e-158
HMMPfam Oligopeptide transporter OPT superfamily 3.1e-180

See the detailed result >

AT5G64410.1

Model type
Protein coding
Short Description
oligopeptide transporter 4
Curator Summary
oligopeptide transporter
Computational Description
oligopeptide transporter 4 (OPT4); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 2 (TAIR:AT1G09930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-C24 introduced

  • F02619 - Specific phenotypes were NOT observed.
  • F08840 - Specific phenotypes were NOT observed.
  • F25921 - rosette leaf::abnormal / stem::decreased thickness / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found