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  3. RAFL09-47-E12

RAFL09-47-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06322)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-E12 - full reading 
ACAGTTTTAC CAAAGCTTTA GAAAACCTTG AAGTGTGATT ATAGATACAC 
TTTTATTCAG AAAAAGAACT TAAGCATGCA GGAGCTGATA AATACTTTGT 
CAGCGCTTAC GACTGAAGAA ATATATCGGC CATTAGCGGA TTTTCCGGTG 
AATATATGGG AAGATCCCTT GATCTCTTTT TCTGTTTTGG ATCCGGAGAG 
TGAGATAAAC GAAGAGAAGC TGAGTTCACT AAAGGAAACC GTAAGAGGAT 
TGTTAATGGC TTCAAAAGAA GAGCCGATAG AGAACATCAA ATTCATTGAT 
GCTCTTTGCC GCCTTGGTGT TTCCTACCAC TTTGAAGTAG ACATCTTCAC 
GCAGTTAGAG ACGATGTTTG GTGTCATGGT TTTATGCAGA TGATAAGAGG 
CAATGAGTTC GATTTATACA CCGTCTCCCT CGTCTTCCAA ATTTTTAGAC 
AATTTGGCTA TAAACTTGGT GTCGATGTGT TTAACAACTT CAAGAATAAG 
GATGGAAAGT TCAAGGAGCA CCTAGCTGAG GATGCAAGAG GTCTTTTATG 
CCTTTATGAA GCTGCACATT GGAGCACCCA TGGTGAAGAC ATTCTCGATG 
AAGCTCTTGC TTTCTCTAGG TCTCATTTGG AAGGACTGGC TGATCAATCT 
AGTCCACCTA TGTCCATCCG CATTAAAAAT GCCCTCAAAC ATGCATACCC 
TAGGGGTATA TCAAGGATAG AGACACGACA ATATATCTCA TACTATGAAG 
AAGAAGATCT GCACGACCAA ACCTTGCTAG AATTTGCTAA GATAGATTTC 
AATCTTCTGC AAATTTTGCA CCGCAAAGAG CTTTGCCAAG TCTTCAGGTG 
CCATTATGAG CTAGCAAGAT AGATTATATA TACATTTTAA AACTCTTATA 
TATGGAGAGA CTACCATAAT GATTGTCGAT TCTTCTTTTT TTGTAGGTGG 
TACTCAAATC TAGAGCTCGA CTTGAAAGTA CCATATGCAA GGAATAGGAC 
TGTCGAAAGC TACTTGTGGG CTGTTGGAGC ATACTTTGAG CCCCGATATT 
CTCAAGCAAG GATTAGATTG GCCATTGTTG TTATCTTATT GACTCTTGTT 
GATGATACGT ACGATGCATT TGGCACGATT GAGGAACTCG AACCATTTCA 
TTGATTATGT GGAATCCTAG CGGCATAGAA GGGCTCCCGG AGAGCATGAG 
GTATCTTCAT CATGTGGTGT TAGATTTCTA CGGAAAACTT GAGGAGGATA 
TGGAGAGGGA AGGAAGGTCA GGATGCGGCC TTTTCGCTAA AAAATCGATG 
ATTGTAACTG CTAAAGCCTA TCTTCAAGAG GCAAAATGGT TGAGTGAAGA 
CTTTGTGGCA ACATTTGACG AGTACAAAGA GAACGGAGTT TATTCATCGA 
GCTACTTAGC TCTGTTAACA GGATCCTTTC TAGGGATGGT GGATGAAGGC 
ACCCTTGATG TGTTTGAATG GTTAAGCACT TTCCCACCCC TTCTTGTGAC 
TTCTGCACTA ATAGGCCGTC TCTGTGGTGA CATTGCTAGT TGCGAGTTTG 
AACATAAGAG AAAGCACGTA GGAACATCCA TTGATTGTTA CATGAAGCAA 
TATGGTATTT CATGGGAAAA AGCCGAAGAA GAGATCAAAA TCATGGCATT 
GGATTCATGG AAGAGTCTTA ATCAAGAACT GATGACGAGA GATCACTCTT 
TTGCTTTCCC TATCGTCATG CGATTCCTAA ACCTCTCGAG GGTCGTCAAG 
GTTTTGTACA AAGACACTGA CATTTTTACA CATCCTGAGT TGATGAAACA 
TCACGTGGTT TCTTTATTCC TTAACAGAAT ATCTATTTGA GCAGAACTAT 
ACGACAGTGC AAGTTGTTTT TTAGTTTCTC CGTTTTATGT TGTGTGGATG 
GATATTAGCC GTTTTCTAAT ATCACACTGT GCGTTTTTTT AATTTTTGTG 
TGTGTTTCTA ATCTTCAATA TGACGAAGAT TAATATATGT ATAGCTGTGT 
TTCTAATGTG TACATGTTGA ATAAATATGT GTTAGTTTTA TTTTC

Gene models with high sequence identity

  1. AT1G54660.1 [+] show detail - pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value ...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 6.2e-05
Gene3D Terpenoid synthase 1.7e-62
Gene3D no description 3.4e-45
Gene3D Terpenoid synthase 1.9e-20
superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 1e-12
superfamily Terpenoid synthase 8e-64
superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 8.1e-41
superfamily Terpenoid synthase 5e-10
superfamily Terpenoid synthase 2.2e-24
HMMPfam Terpene synthase-like 4.2e-13
HMMPfam Terpene synthase, metal-binding domain 4.5e-33
HMMPfam Terpene synthase-like 4.5e-33
HMMPfam Terpene synthase, metal-binding domain 5.1e-20

See the detailed result >

AT1G54660.1

Model type
Pseudogene
Computational Description
pseudogene, similar to vetispiradiene synthase, blastp match of 54% identity and 3.0e-79 P-value to GP|5360685|dbj|BAA82108.1||AB022719 vetispiradiene synthase {Solanum tuberosum}
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-E12 introduced

  • F29313 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found