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  3. RAFL09-47-J15

RAFL09-47-J15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06337)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-J15 - full reading 
GTGAATCAAA AACCAGCGAT CAAAAGTCTT CTTCTTGTGA ATCTGTGATC 
TCAAAAGCTC CTTTAACCAT GGCGACTTTT GATGATGGAG ATTTCCCAGC 
TCAAACCCAT TCTCCGTCTG AACACGAAGA CTTTGGTGGC TACGATAATT 
TCTCCGAAGC ACAGCAACCT CCGACTCAAC ATCAATCCGG TGGATTCTCT 
TCTTTCAATG GAGATCCTGC TTCCCCAAAT GGATATGGAT TTGGTGCTTC 
TTCACCTAAC CATGACTTTT CCTCGCCTTT TGAATCTTCC GTTAACGATG 
CTAACGGAAA CGGCGGCGGC AGCGGTGGTG ATGCGATCTT CGCTTCCGAT 
GGTCCGATTC TTCCAGATCC AAATGAGATG AGAGAGGAGG GTTTCCAACG 
CCGTGAGTGG CGCCGTTTGA ACACCATTCA CCTTGAGGAG AAGGAAAAGA 
AAGAGAAGGA GATGCGGAAT CAGATCATAA CTGAAGCAGA AGATTTCAAG 
AAAGCCTTCT ATGAGAAAAG AGACAAGACC ATTGAGACCA ACAAGACTGA 
TAACCGTGAA AAGGAGAAGC TATACTGGGC TAACCAAGAG AAGTTCCACA 
AAGAAGTTGA CAAGCATTAC TGGAAAGCAA TTGCAGAGCT AATCCCTCGT 
GAGGTTCCCA ACATTGAGAA AAAGAGAGGG AAAAAGGATC CGGACAAGAA 
ACCATCAGTG AATGTTATTC AGGGTCCTAA ACCTGGGAAG CCAACTGATC 
TAGGGAGAAT GAGGCAGATA TTCTTGAAGC TCAAGACAAA TCCCCCACCT 
CACATGATGC CGCCTCCTCC TCCAGCCAAA GATGCCAAAG ATGGGAAGGA 
TGCGAAAGAT GGCAAAGATG CAAAAACTGG GAAAGATGGG AAGGATGCAA 
AAGGAGGGAA AGACGCTAAG GACTTAAAAG ATGGGAAACC TGCAGATCCA 
AAGGTGACAG AGGAAAAACG TCCTTCACCT GCCAAAGACG CAAGTGTTGA 
AACAGCGAAA CCTGATGCTG CTGCCTCGGG AGAGGGAGAG AAACCTGTAG 
CTGTGACTGA GGCCGAGGGA ACCAAGGCGG AGTGAAGGGT CTTTAGTATT 
ACTGTTGGGG GATTATTTGA TATTGATGAA GTCACAATAG CTGCGGGCGA 
AAATAAGAAG AGGTAAGTTA TGTGCACATA GAAGCTCTTA TGGGCGCTGT 
CTGTGAGCAC AACATTTCCT CTTCTGGGGA GAGAATTTTA GTCCTTTTGT 
TTTTGGTTAT TATTTTTTAT TACCATTATA TTTGTTCTGC AAAATTTGGT 
TATTGTCTTG GATGATGTTC ACCTTAAATC ATTTTGGTTC CACGTATTTT 
ACATTTATAA GACTTGAGAG AAGTAAAGGT TTGTTGGATG AATCATTTGA 
TTGTATTGTG TGATGTGGGC ATGAGGTAGT TGAGGAGTGT CATGGCATGT 
GAACTATCTT TCTTT

Gene models with high sequence identity

  1. AT2G20760.1 [+] show detail - Clathrin light chain protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Clathrin light chain 3.3e-07
HMMPanther Clathrin light chain 6.9e-09
Coil coiled-coil 0

See the detailed result >

AT2G20760.1

Model type
Protein coding
Short Description
Clathrin light chain protein
Computational Description
Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 1791 Blast hits to 1279 proteins in 282 species: Archae - 0; Bacteria - 563; Metazoa - 557; Fungi - 96; Plants - 161; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-J15 introduced

  • F20843 - Specific phenotypes were NOT observed.
  • F23035 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found