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  3. RAFL09-47-K03

RAFL09-47-K03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06339)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-K03 - full reading 
ACCACCTCTC AAAGTCGCCT GAGAATCAGA GCTCTCTCTT TTCTCTCTCC 
CATCCTTTTT TTTTTTTTTT TTTTTTCTGT CGGGTTCTTT GTGCTTTCCG 
TCAATTTCTT CTCGGAGAGC GACTAATTTC GACGATTAGC TCGGTGGCTG 
TTTTCTTTCA ATTCGTGCAT TTCGTCAGAT TAACAGGTTT TAAGGGAAAT 
TTCTTCCACG CGACGACTTT TTTTTGTTTG GTTCAAGAAT CAGTAAATGT 
ATTCGCCTTT CATTGCAGTA GTAGGGTTTA TAGTTTCTTA AGCTAGAGGT 
GTGAGTTTTT TTCTTCTCCT TAGGTTTTGA GATATAAATT TTGGGTTGTA 
ATGGGGGATA TAACTTGGGT TGAAGAGGGT AATGGCTCTG CGACTTCTTC 
GAGGAAAAGG AAAGCGAGAC CTAAACGATT CGAATTTGTA GGATGGGGTT 
CGAGACAACT CATTGAGTTT CTACACTCTC TTGGTAAAGA TACTTCAGAA 
ATGATCTCTC GTTATGATGT TAGTGACACT ATTGCTAAGT ATATTTCAAA 
GGAAGGTCTT TTAGATCCTT CCAATAAGAA GAAAGTTGTG TGCGACAAAA 
GATTGGTTTT GCTTTTCGGG ACTAGGACGA TTTTCAGAAT GAAAGTCTAT 
GATCTCCTTG AAAAGCATTA CAAAGAGAAT CAGGATGATT CTGACTTTGA 
TTTTCTCTAC GAGGATGAGC CGCAGATTAT TTGTCATTCG GAGAAGATAG 
CTAAACGGAC AAGTAAGGTT GTTAAGAAAC CTAGAGGTAC TTTTGCTGCT 
ATTGTGAGTG ATAATATCAA GCTTCTCTAC TTGAGAAAGA GCTTAGTCCA 
GGAACTGCTC AAGTCTCCTG ATACCTTTGA GGGTAAAATG TTGGGAAGTT 
TTGTGAGGAT CAAGTCTGAC CCTAATGATT ATCTTCAGAA GTACCCTTAT 
CAGCTTGTTC AGGTGACAGG CGTGAAGAAG GAACATGGGA CTGATGATTT 
TCTTCTTCAG GTTACAAATT ATGTGAAAGA TGTTTCTATA TCTGTGCTAT 
CTGATGATAA TTTCTCCCAG GTAATATACT TAGAAGTTAG AAATAATGTT 
CATACCTCAA TTTTTTGCTT ATGATCGATG CAAAGTCAGG TACCCATGTA 
GTTTAAGAAC CGGCAATTGG GATTCTGTTC TAGTTATATA ACACATACTA 
TCTTTCACTA TTACTATGTT TGACAAACGC CCCCATTTTA ACCTATATAA 
TCTGTCGTTT ATCATAGCTT GATGTAAACT TTTTCAGGAG GAATGTGAAG 
ATTTACATCA GAGAATAAAG AACGGACTTC TTAAGAAGCC TACTATTGTA 
AGTTTTCTAT TAAGATTGCC AAGACATGCC ATTTTGCAGA GGTTTGGAAG 
ATAATTATTG CAGCTCCCTC TGTTAAAGAT TTGCATTTTT TCTGTCATGT 
ATCCCAGCGA CTTGCTAACC TTGCTGTTCA TGACATTTTG ATTTTGTAGT 
TCTTTAATCA TAATTCATTT TGAACCTTGG ATAGGTGGAG ATGGAAGAAA 
AAGCTAAAAA ATTACATAAA GATCAAACAA AACACTGGCT TGGAAGAGAA 
ATTGAATTGT TAAAAAGGCT TATTGATCGG GCTAATGAGA AGGGATGGCG 
AAGAGAGCTG TCCGAGTACC TAGATAAGAG GGAGCTTCTT CAAAATCCAG 
ATGAACAGGC CAGGCTACTC CGCGAAGTTC CAGAAGTTAT TGGAGAGGAA 
CTTGTACAAA ACCCTGAAGT TTCGTCCCCT GAGGCTCATA AAAGTGACAA 
CGAGCAACGA TTGAGTGAAT CTCCATTATC GTGCATCCAT GAAACCCCAG 
AAGCTCGCAA CCTCTTTGGT GGAGAAGATC AACAATTTAA TAACGGCTAT 
GTGATGTCAA ACCCCATCAC AACTCCGGGA ATCACATCTT GTGCTACGGA 
AATTAACAAG GGATTGCCAA CATGGATTGC TTCTGCAGGT GCTGAGTATC 
TTCATGTAGA TGTAGAGCAG CCAGCAAATG GCATCATTGG AGGAGAGACG 
CCGACTGAAG AGTCTAAAGT TTCTCAGCTT CAGTCAAGTA TACCAGTAAA 
TAATGTCGAC AACGGATCTC AAGTTCAACC AAATCCATCA GAAGTAATCG 
AACTGAGCGA TGATGATGAA GATGACAACG GTGATGGAGA GACCCTGGAC 
CCTAAAGTTG AAGACGTCCG GGTTCTGTCT TATGATAAAG AGAAGTTAAA 
CTGGTTATAC AAAGATCCTC AGGGTCTTGT ACAGGGACCA TTCTCTCTCA 
CACAACTCAA AGCTTGGAGC GACGCAGAGT ATTTCACCAA ACAGTTCAGG 
GTTTGGATGA CAGGAGAAAG CATGGAATCC GCAGTTTTAC TAACCGATGT 
TCTTCGTCTA GTGTAACTAA TGCAATACTC TGAAGACTAT TAGATTCAGT 
CAAAAGTGGT TTCAGTAATC TGTTATCGTC TGTCATTATC TTCAAATTGC 
AGTAGGTTTT GCTCCTCCTT TTCAGTAAAC AGC

Gene models with high sequence identity

  1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily GYF 0.00000000005
superfamily SWIB/MDM2 domain 8.2e-25
HMMSmart GYF 0.00000031
HMMSmart Plus-3 domain, subgroup 2.3e-35
HMMPfam GYF 0.00000000000011
HMMPfam Plus-3 1e-19
HMMPfam SWIB/MDM2 domain 9e-18
Gene3D SWIB/MDM2 domain 1.4e-39
HMMPanther GRB10 INTERACTING GYF PROTEIN 0.000011
ProfileScan GYF 15.513
ProfileScan Plus-3 21

See the detailed result >

AT5G08430.1

Model type
Protein coding
Short Description
SWIB/MDM2 domain;Plus-3;GYF
Computational Description
SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-K03 introduced

  • F10214 - Specific phenotypes were NOT observed.
  • F17249 - rosette leaf::dark green / stem::increased thickness / cauline leaf::dark green / cauline leaf::abnormal / whole plant::increased height / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found