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  3. RAFL09-47-K03

RAFL09-47-K03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06339)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-K03 - full reading
ACCACCTCTC AAAGTCGCCT GAGAATCAGA GCTCTCTCTT TTCTCTCTCC 
CATCCTTTTT TTTTTTTTTT TTTTTTCTGT CGGGTTCTTT GTGCTTTCCG
TCAATTTCTT CTCGGAGAGC GACTAATTTC GACGATTAGC TCGGTGGCTG
TTTTCTTTCA ATTCGTGCAT TTCGTCAGAT TAACAGGTTT TAAGGGAAAT
TTCTTCCACG CGACGACTTT TTTTTGTTTG GTTCAAGAAT CAGTAAATGT
ATTCGCCTTT CATTGCAGTA GTAGGGTTTA TAGTTTCTTA AGCTAGAGGT
GTGAGTTTTT TTCTTCTCCT TAGGTTTTGA GATATAAATT TTGGGTTGTA
ATGGGGGATA TAACTTGGGT TGAAGAGGGT AATGGCTCTG CGACTTCTTC
GAGGAAAAGG AAAGCGAGAC CTAAACGATT CGAATTTGTA GGATGGGGTT
CGAGACAACT CATTGAGTTT CTACACTCTC TTGGTAAAGA TACTTCAGAA
ATGATCTCTC GTTATGATGT TAGTGACACT ATTGCTAAGT ATATTTCAAA
GGAAGGTCTT TTAGATCCTT CCAATAAGAA GAAAGTTGTG TGCGACAAAA
GATTGGTTTT GCTTTTCGGG ACTAGGACGA TTTTCAGAAT GAAAGTCTAT
GATCTCCTTG AAAAGCATTA CAAAGAGAAT CAGGATGATT CTGACTTTGA
TTTTCTCTAC GAGGATGAGC CGCAGATTAT TTGTCATTCG GAGAAGATAG
CTAAACGGAC AAGTAAGGTT GTTAAGAAAC CTAGAGGTAC TTTTGCTGCT
ATTGTGAGTG ATAATATCAA GCTTCTCTAC TTGAGAAAGA GCTTAGTCCA
GGAACTGCTC AAGTCTCCTG ATACCTTTGA GGGTAAAATG TTGGGAAGTT
TTGTGAGGAT CAAGTCTGAC CCTAATGATT ATCTTCAGAA GTACCCTTAT
CAGCTTGTTC AGGTGACAGG CGTGAAGAAG GAACATGGGA CTGATGATTT
TCTTCTTCAG GTTACAAATT ATGTGAAAGA TGTTTCTATA TCTGTGCTAT
CTGATGATAA TTTCTCCCAG GTAATATACT TAGAAGTTAG AAATAATGTT
CATACCTCAA TTTTTTGCTT ATGATCGATG CAAAGTCAGG TACCCATGTA
GTTTAAGAAC CGGCAATTGG GATTCTGTTC TAGTTATATA ACACATACTA
TCTTTCACTA TTACTATGTT TGACAAACGC CCCCATTTTA ACCTATATAA
TCTGTCGTTT ATCATAGCTT GATGTAAACT TTTTCAGGAG GAATGTGAAG
ATTTACATCA GAGAATAAAG AACGGACTTC TTAAGAAGCC TACTATTGTA
AGTTTTCTAT TAAGATTGCC AAGACATGCC ATTTTGCAGA GGTTTGGAAG
ATAATTATTG CAGCTCCCTC TGTTAAAGAT TTGCATTTTT TCTGTCATGT
ATCCCAGCGA CTTGCTAACC TTGCTGTTCA TGACATTTTG ATTTTGTAGT
TCTTTAATCA TAATTCATTT TGAACCTTGG ATAGGTGGAG ATGGAAGAAA
AAGCTAAAAA ATTACATAAA GATCAAACAA AACACTGGCT TGGAAGAGAA
ATTGAATTGT TAAAAAGGCT TATTGATCGG GCTAATGAGA AGGGATGGCG
AAGAGAGCTG TCCGAGTACC TAGATAAGAG GGAGCTTCTT CAAAATCCAG
ATGAACAGGC CAGGCTACTC CGCGAAGTTC CAGAAGTTAT TGGAGAGGAA
CTTGTACAAA ACCCTGAAGT TTCGTCCCCT GAGGCTCATA AAAGTGACAA
CGAGCAACGA TTGAGTGAAT CTCCATTATC GTGCATCCAT GAAACCCCAG
AAGCTCGCAA CCTCTTTGGT GGAGAAGATC AACAATTTAA TAACGGCTAT
GTGATGTCAA ACCCCATCAC AACTCCGGGA ATCACATCTT GTGCTACGGA
AATTAACAAG GGATTGCCAA CATGGATTGC TTCTGCAGGT GCTGAGTATC
TTCATGTAGA TGTAGAGCAG CCAGCAAATG GCATCATTGG AGGAGAGACG
CCGACTGAAG AGTCTAAAGT TTCTCAGCTT CAGTCAAGTA TACCAGTAAA
TAATGTCGAC AACGGATCTC AAGTTCAACC AAATCCATCA GAAGTAATCG
AACTGAGCGA TGATGATGAA GATGACAACG GTGATGGAGA GACCCTGGAC
CCTAAAGTTG AAGACGTCCG GGTTCTGTCT TATGATAAAG AGAAGTTAAA
CTGGTTATAC AAAGATCCTC AGGGTCTTGT ACAGGGACCA TTCTCTCTCA
CACAACTCAA AGCTTGGAGC GACGCAGAGT ATTTCACCAA ACAGTTCAGG
GTTTGGATGA CAGGAGAAAG CATGGAATCC GCAGTTTTAC TAACCGATGT
TCTTCGTCTA GTGTAACTAA TGCAATACTC TGAAGACTAT TAGATTCAGT
CAAAAGTGGT TTCAGTAATC TGTTATCGTC TGTCATTATC TTCAAATTGC
AGTAGGTTTT GCTCCTCCTT TTCAGTAAAC AGC

Gene models with high sequence identity

  1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily GYF 5e-11
superfamily SWIB/MDM2 domain 8.2e-25
HMMSmart GYF 3.1e-07
HMMSmart Plus-3 domain, subgroup 2.3e-35
HMMPfam GYF 1.1e-13
HMMPfam Plus-3 1e-19
HMMPfam SWIB/MDM2 domain 9e-18
Gene3D SWIB/MDM2 domain 1.4e-39
HMMPanther GRB10 INTERACTING GYF PROTEIN 1.1e-05
ProfileScan GYF 15.513
ProfileScan Plus-3 21

See the detailed result >

AT5G08430.1

Model type
Protein coding
Short Description
SWIB/MDM2 domain;Plus-3;GYF
Computational Description
SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-K03 introduced

  • F10214 - Specific phenotypes were NOT observed.
  • F17249 - rosette leaf::dark green / stem::increased thickness / cauline leaf::dark green / cauline leaf::abnormal / whole plant::increased height / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found