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  3. RAFL09-47-L06

RAFL09-47-L06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06346)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-L06 - full reading 
AGAAGTGGTA TAGTCTAGGC CGATACATTT CACTATCTCT CTCTCTTTTG 
TTTTTCCTCT TCTTCTTTTT TTCCATTTGA TTTCAAACTC TCACACAAAG 
AGCTTCAGAT TTATAAGACC ATGATAATGG CTTTAAGACA AAGATTGGCA 
AGAAGAAAAA ACTAAAGAGA AACGACCAAA ATCTCAAGCA AACAGTACTA 
ACTTCTGTTG CAAAACAGAA GAAGATGTCT TGTAATAATG GAATGTCTTT 
TTTCCCTTCA AATTTCATGA TCCAAACCTC TTACGAAGAT GATCATCCTC 
ATCAATCTCC ATCTCTTGCT CCTCTTCTTC CTTCTTGCTC TCTACCTCAA 
GATCTCCATG GATTTGCTTC GTTTCTAGGT AAGAGATCTC CAATGGAAGG 
GTGTTGTGAT TTAGAAACAG GGAACAATAT GAATGGAGAA GAGGATTATT 
CAGATGATGG GTCACAAATG GGAGAGAAGA AGAGGAGATT GAACATGGAA 
CAAGTGAAGA CACTAGAGAA GAACTTTGAG CTTGGAAACA AACTTGAACC 
AGAGAGGAAA ATGCAGCTAG CTCGTGCCTT AGGTTTGCAA CCAAGACAGA 
TCGCGATTTG GTTTCAAAAT CGAAGAGCTC GTTGGAAAAC AAAGCAGCTA 
GAGAAAGATT ATGATACTCT TAAACGACAG TTTGATACAC TTAAAGCTGA 
AAATGATCTT CTTCAAACTC ATAATCAGAA ACTCCAAGCT GAGATAATGG 
GATTAAAAAA CAGAGAACAA ACAGAATCAA TAAATCTAAA CAAAGAAACT 
GAAGGATCTT GCAGTAACAG AAGTGATAAC AGTTCAGATA ATCTCAGACT 
AGATATCTCA ACTGCGCCGC CATCAAACGA CAGTACATTA ACCGGTGGCC 
ACCCACCGCC ACCACAGACA GTTGGTCGAC ACTTCTTCCC ACCGTCGCCA 
GCCACCGCAA CGACAACTAC TACAACAATG CAGTTCTTTC AAAACTCATC 
TTCAGGACAG AGTATGGTTA AAGAAGAGAA TAGTATCAGT AACATGTTCT 
GTGCAATGGA TGACCATTCT GGTTTTTGGC CATGGCTTGA TCAGCAACAG 
TACAATTGAA ATTGGTCTAC CTGTTTTTTT TGTTTTTGTT TTTAAAAAAA 
TTTATATTTT TTTTTTTTGT ATTTGGAATT TTGATCAGAA GAACCCATGC 
ATGTTTTCAA AAACTGGAAT CTATATCATT AGCTCACTTT C

Gene models with high sequence identity

  1. AT1G69780.1 [+] show detail - Homeobox-leucine zipper protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Homeodomain-like 6.5e-20
Gene3D Homeodomain-related 0.00000000000001
PatternScan Homeobox, conserved site 0
ProfileScan Homeobox 17.216
HMMPfam Leucine zipper, homeobox-associated 9.4e-18
HMMPfam Homeobox 0.0000000000000023
FPrintScan Helix-turn-helix motif, lambda-like repressor 0.000014
FPrintScan Helix-turn-helix motif, lambda-like repressor 0.000014
HMMPanther HOMEOBOX PROTEIN 0.00000000000027
HMMSmart Homeobox 1.8e-17
Coil coiled-coil 0

See the detailed result >

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-L06 introduced

  • F05738 - Specific phenotypes were NOT observed.
  • F08235 - rosette leaf::increased size / stem::increased thickness
  • F18436 - Specific phenotypes were NOT observed.
  • F23451 - Specific phenotypes were NOT observed.
  • F25106 - Specific phenotypes were NOT observed.
  • F26733 - rosette leaf::abnormal / rosette leaf::abnormal / stem::decreased thickness / stem::abnormal / whole plant::decreased height / whole plant flowering stage::late / fruit::decreased length

Mutant lines with disrupted or induced

18 mutant lines found