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RAFL09-47-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06352)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-M11 - full reading 
AAACAAATTA TATATTTTCT TACTTACTTG TTCTCTTGTA ATGGATTTCT 
CTCCGATCAA CTGCCTCATT TTCGATTTGG ATGACACATT ATACCCTCTA 
AAAACTGGAA TAGCGCCAGC TGTCAAGAAG AATATTGACG ATTTTCTAGT 
GGAGAAATTT GGATTCTCAG AAAGTAAAGC TTCAAGCTTA AGAGTTGAAC 
TCTTCAAGAC TTATGGAAGT ACTCTCGCTG GTCTTAGGGC GTTAGGTCAT 
GATGTTCATC CTGATGAATA TCACAGTTTC GTGCACGGAA GGTTACCGTA 
TGGGTCGATC GAACCAAACA ACAAGCTACG TAACCTTCTC AACAAAATCA 
AACAGAGAAA AATTATATTT ACGAATTCGG ACAAGAATCA TGCGGTGAAG 
GTCCTCAAGA AACTTGGTTT AGAAGATTGT TTCGAAGAGA TGATTTGTTT 
TGAGACAATG AACCCAAATT TATTCGGGTC AACAACCCGA CCCGATGAAT 
ACCCGGTTGT TCTCAAGCCT TCGTTGACCG CAATGGATAT TTGCATTCGT 
GTAGCCAACG TTGATCCTCG CCGAACAGTA TTTTTGGATG ATAATATCCA 
CAATATTACC GCGGGTAAAT CTGTCGGGCT TCGCACAATC CTGGTGGGAA 
GAGCAGAAAA GACGAAAGAT GCGGATTATG CGGTGGAGAC GGTTACTGAG 
ATAGCTACGG CGGTGCCAGA GATTTGGGCT ACGGCGACGG CGACAGGCGG 
ATTTGACGTT GGTGGTGAGA GGATCAGACG GAGCAAGAGT GAGCTGGAGG 
GTATGGCTTC AATAGCAGCC GTCGGTGCGT GACGTGATCG AGTGGGCGGA 
TCGTGGCCGT TGGATAATTT TAACGTCTAG TGGTTGGGAT TGTACAGGTG 
GCGTTAAAAT GTTGATAATG CATATGTGAA TATAAATAAT AGTGGTGGTG 
GACAATATTC ATCCCATGTG GACACCAAAT GTGAATACGC AATCAGATAA 
TATTATGTAT GATGATTATG ATTTCAATAT GTGTACATTT TTATTCAACT 
GATTTTTTTA AAGTT

Gene models with high sequence identity

  1. AT2G32150.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily HAD-like 3.6e-27
HMMPanther 4-NITROPHENYLPHOSPHATASE-RELATED 0.00028
Gene3D no description 3.9e-11
HMMTigr Pyrimidine 5-nucleotidase 4.6e-96
HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 3 1.2e-07
HMMPfam Haloacid dehalogenase-like hydrolase 2.3e-07

See the detailed result >

AT2G32150.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 2392 Blast hits to 2391 proteins in 515 species: Archae - 15; Bacteria - 775; Metazoa - 2; Fungi - 155; Plants - 196; Viruses - 0; Other Eukaryotes - 1249 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-M11 introduced

  • F07713 - Specific phenotypes were NOT observed.
  • F10842 - Specific phenotypes were NOT observed.
  • F13416 - Specific phenotypes were NOT observed.
  • F13906 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found