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  3. RAFL09-47-N12

RAFL09-47-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06357)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-N12 - full reading
GGCTTCAATT TTTGCGTTTT CTCTGCAACT CGCCGTCAAG GGTAGAAGAA 
TTAGGGGTTC CTGTTCTTAA CTGCTTGAAG ATGACGTCTT ATGGAGATAG
ACTGAAGTCG ACCTCCATTA ATGGAGTTAA GTTATACAAT GTTTCTTCTG
CTCCCAATGT TCCTACTTGG CTTAATCCTA AGAAGCAACG AGCTCTCCGC
AAAAACCCTC ATTATATGCA AAGAGTGGAG CTGATTCAGG AGTTGAAGTT
TGAGACTGCC ACTACTAGAA TCAAAGCGAC TCCAGACGGA GAGTATCTGA
TTGCTTCAGG CATATATCCA CCACAGGTAA AAGTTTATGA GCTAAATCAG
CTTGCTTTGA AGTTTGAGAG GCATTTGGAC TCGGAAATAG TTGATTTCGA
GATATTGGAT GATGACTTCT CAAAGCTTGC CTTCTTATGT GCTGATCGTT
CTATTAATTT ACACGCCAAA TACGGGAAAC ACCACACTTT ACGAATTCCA
AGGATGGGGA GAGATATGAC ATATGATTCC TGGTCTTGTG ATCTTCTTTG
CGCTGCTTCC TCACCTGATC TATATAGAAT CAATTTGGAG CAGGGAAGAT
TTCTTTCTCC TCTCAGCACT CAATCCCCAG CGCTTAATGT CGTTTCTCGA
AGCAACCTCC ATGGATTAGT TGCTTGTGGT GGTGAGGATG GTGCTGTGGA
ATTTTTTGAT ATGAGAATGA AATCATCTGC TGCTAGAATT AACGCGGTCA
CACATGGTGG TGATGCTGCT GCGGAGGTTA CTGCTATAGA GTTTGATGAC
AGTGAAGGTC TTCAAGTAGC TGTCGGGAGT AGCGCGGGAA AGGTATTCAT
ATACGACTTG CGTACTTCAA CTCCCATAAG AGTGAAGGAT CACATGTACG
AGAGCCCAAT TTTGAATATT AAGTGGCAAC GGACTCTTAA TACTCAACAA
CCTAAGTTGA TTACTACCGA CAAACACATT GTTAGAATAT GGGATCCAAA
CACGGGAGAA GGTATGACCA GCATTGAACC GACTCAAGGA GGAATAAACG
ACATTTGTGT GTTCCGTGGA AGCGGACTTA TGCTTCTTGC TTTAGACTCT
AGCCTAATCC CATCTTACTT CATACCTGAA CTCGGTCCTG CCCCCAAATG
GTGTTCTCCT CTTGAAAATC TAACGGAAGA GTTGGAGGAA AGTGCACAGA
CAACTATTTA TGATAATTAC AAATTTTTGG CAATGGAAGA TCTGGAGAAG
TTGCAGCTAA CTCATTTGAT TGGAACAGAT CTTTTGAAAG CATCTATGCA
TGGATATTTT ATTAATTACC ATTTGTACAA AAAGGCTTTA GCAGTGATTG
AACCTTTTGC ATTTGATGAT TACTTAGAAC GTAGGAAGCA AGAGAAGTTA
GAAGAGCAGC GTACGCAGAG AATCACAAAA AAGAGACGGT TGCCAAAGGT
TAACCGAGAC CTTGCAGCAA GGCTTCATGG GGACGAATCA GAGGAGGAAA
ATAAAACTGC CGAGGATGGG GAGGCCACCA AGAAAGTGCT GAAAAAGAAG
AAACCCATAC TTACTGACGA GCATTTCGTA GATGGTCGGT TTGGTTCGAT
GTTCCAAAAT CCGGACTTCC AAATTGATAA GGACTCATAT GAATATGGTG
TCCTACACCC TGTTGCTTCT TCGAAGAAGC AACCTTCTCT GTTAGATGAA
CACTTTGAAG CTGTATCAGA TGATGACGAG AACAGTGATT CTGATGCATC
ACAGCCTTCA GATGACGAGG CCGACGATGG AGACGCAACT AGGCCAAGCA
AGAAAGCGAG AACTCCGAAG TTGTATGAAG TGAAAGATGA GCGGCATGCC
GCAGCTTATC ACAACCGCAC TTCACTGGCT AAAGAAGATA GTCTTCCTAT
GGGCGAGCGT GTCAAGGCTA TAGAGAACCG GCGTGGCAAC TTTGGAGGCT
CGAAAGATAT CAAATTCGGT CCTGGAGGAT CACGGGAGTT TTCTTTCAAG
GCGAGAGGGT CATCAAAGTA CAAAGAAGAT AGAGACGATG AGTATGAAGA
TGGGCAAAGA AACAAGAGGA GAGGAGTTCA GTCTCTTGGA CTGAAATCAA
CAAATATTAG AGGCGGTTTC AGAGGTAGAG GAGGTGGTGG TTTTAGAGGG
AGAGGAGGCG GCGGTTCCCG GGGAAAAGGT GGCCGTGGTG GTGGGCGTGG
AAGAGGCCGG CAATGATAAA TGTAGCTTTT CAGGGGCTTT ATTAGATTTG
AAAAATGTGT CACCTACTAT TGAGAATCTT GAAACTTAAT TGATCACATA
TACAATTTTG G

Gene models with high sequence identity

  1. AT3G56990.1 [+] show detail - embryo sac development arrest 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily WD40 repeat-like-containing domain 1.6e-24
HMMPfam NUC153 4.1e-11
Gene3D WD40/YVTN repeat-like-containing domain 5.1e-13
HMMPanther UNCHARACTERIZED 8.5e-266

See the detailed result >

AT3G56990.1

Model type
Protein coding
Short Description
embryo sac development arrest 7
Computational Description
embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-N12 introduced

  • F05317 - Specific phenotypes were NOT observed.
  • F08717 - whole plant::decreased height / fruit::decreased length / stem::abnormal / stem internode::decreased length / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / whole plant::decreased height / stem::present in fewer numbers in organism / stem::abnormal / stem internode::decreased length

Mutant lines with disrupted or induced

2 mutant lines found