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  3. RAFL09-47-N12

RAFL09-47-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06357)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-N12 - full reading 
GGCTTCAATT TTTGCGTTTT CTCTGCAACT CGCCGTCAAG GGTAGAAGAA 
TTAGGGGTTC CTGTTCTTAA CTGCTTGAAG ATGACGTCTT ATGGAGATAG 
ACTGAAGTCG ACCTCCATTA ATGGAGTTAA GTTATACAAT GTTTCTTCTG 
CTCCCAATGT TCCTACTTGG CTTAATCCTA AGAAGCAACG AGCTCTCCGC 
AAAAACCCTC ATTATATGCA AAGAGTGGAG CTGATTCAGG AGTTGAAGTT 
TGAGACTGCC ACTACTAGAA TCAAAGCGAC TCCAGACGGA GAGTATCTGA 
TTGCTTCAGG CATATATCCA CCACAGGTAA AAGTTTATGA GCTAAATCAG 
CTTGCTTTGA AGTTTGAGAG GCATTTGGAC TCGGAAATAG TTGATTTCGA 
GATATTGGAT GATGACTTCT CAAAGCTTGC CTTCTTATGT GCTGATCGTT 
CTATTAATTT ACACGCCAAA TACGGGAAAC ACCACACTTT ACGAATTCCA 
AGGATGGGGA GAGATATGAC ATATGATTCC TGGTCTTGTG ATCTTCTTTG 
CGCTGCTTCC TCACCTGATC TATATAGAAT CAATTTGGAG CAGGGAAGAT 
TTCTTTCTCC TCTCAGCACT CAATCCCCAG CGCTTAATGT CGTTTCTCGA 
AGCAACCTCC ATGGATTAGT TGCTTGTGGT GGTGAGGATG GTGCTGTGGA 
ATTTTTTGAT ATGAGAATGA AATCATCTGC TGCTAGAATT AACGCGGTCA 
CACATGGTGG TGATGCTGCT GCGGAGGTTA CTGCTATAGA GTTTGATGAC 
AGTGAAGGTC TTCAAGTAGC TGTCGGGAGT AGCGCGGGAA AGGTATTCAT 
ATACGACTTG CGTACTTCAA CTCCCATAAG AGTGAAGGAT CACATGTACG 
AGAGCCCAAT TTTGAATATT AAGTGGCAAC GGACTCTTAA TACTCAACAA 
CCTAAGTTGA TTACTACCGA CAAACACATT GTTAGAATAT GGGATCCAAA 
CACGGGAGAA GGTATGACCA GCATTGAACC GACTCAAGGA GGAATAAACG 
ACATTTGTGT GTTCCGTGGA AGCGGACTTA TGCTTCTTGC TTTAGACTCT 
AGCCTAATCC CATCTTACTT CATACCTGAA CTCGGTCCTG CCCCCAAATG 
GTGTTCTCCT CTTGAAAATC TAACGGAAGA GTTGGAGGAA AGTGCACAGA 
CAACTATTTA TGATAATTAC AAATTTTTGG CAATGGAAGA TCTGGAGAAG 
TTGCAGCTAA CTCATTTGAT TGGAACAGAT CTTTTGAAAG CATCTATGCA 
TGGATATTTT ATTAATTACC ATTTGTACAA AAAGGCTTTA GCAGTGATTG 
AACCTTTTGC ATTTGATGAT TACTTAGAAC GTAGGAAGCA AGAGAAGTTA 
GAAGAGCAGC GTACGCAGAG AATCACAAAA AAGAGACGGT TGCCAAAGGT 
TAACCGAGAC CTTGCAGCAA GGCTTCATGG GGACGAATCA GAGGAGGAAA 
ATAAAACTGC CGAGGATGGG GAGGCCACCA AGAAAGTGCT GAAAAAGAAG 
AAACCCATAC TTACTGACGA GCATTTCGTA GATGGTCGGT TTGGTTCGAT 
GTTCCAAAAT CCGGACTTCC AAATTGATAA GGACTCATAT GAATATGGTG 
TCCTACACCC TGTTGCTTCT TCGAAGAAGC AACCTTCTCT GTTAGATGAA 
CACTTTGAAG CTGTATCAGA TGATGACGAG AACAGTGATT CTGATGCATC 
ACAGCCTTCA GATGACGAGG CCGACGATGG AGACGCAACT AGGCCAAGCA 
AGAAAGCGAG AACTCCGAAG TTGTATGAAG TGAAAGATGA GCGGCATGCC 
GCAGCTTATC ACAACCGCAC TTCACTGGCT AAAGAAGATA GTCTTCCTAT 
GGGCGAGCGT GTCAAGGCTA TAGAGAACCG GCGTGGCAAC TTTGGAGGCT 
CGAAAGATAT CAAATTCGGT CCTGGAGGAT CACGGGAGTT TTCTTTCAAG 
GCGAGAGGGT CATCAAAGTA CAAAGAAGAT AGAGACGATG AGTATGAAGA 
TGGGCAAAGA AACAAGAGGA GAGGAGTTCA GTCTCTTGGA CTGAAATCAA 
CAAATATTAG AGGCGGTTTC AGAGGTAGAG GAGGTGGTGG TTTTAGAGGG 
AGAGGAGGCG GCGGTTCCCG GGGAAAAGGT GGCCGTGGTG GTGGGCGTGG 
AAGAGGCCGG CAATGATAAA TGTAGCTTTT CAGGGGCTTT ATTAGATTTG 
AAAAATGTGT CACCTACTAT TGAGAATCTT GAAACTTAAT TGATCACATA 
TACAATTTTG G

Gene models with high sequence identity

  1. AT3G56990.1 [+] show detail - embryo sac development arrest 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily WD40 repeat-like-containing domain 1.6e-24
HMMPfam NUC153 0.000000000041
Gene3D WD40/YVTN repeat-like-containing domain 0.00000000000051
HMMPanther UNCHARACTERIZED 8.5e-266

See the detailed result >

AT3G56990.1

Model type
Protein coding
Short Description
embryo sac development arrest 7
Computational Description
embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-N12 introduced

  • F05317 - Specific phenotypes were NOT observed.
  • F08717 - whole plant::decreased height / fruit::decreased length / stem::abnormal / stem internode::decreased length / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / whole plant::decreased height / stem::present in fewer numbers in organism / stem::abnormal / stem internode::decreased length

Mutant lines with disrupted or induced

2 mutant lines found