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RAFL09-48-A15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06368)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-A15 - full reading 
AATGCATGAT TATTACGTTG GAGCCTCTTC GATAGAGAGA TTTTTGCTTT 
CTCAATTTAT TATTTTTTGT GTCTCTCTCT CGCCCGATTT GGAGTTTTTA 
GGGTTTGATT TTTGTAATGT GAGAAAGGTT TCGTTATGTT AAAGAGGCAC 
TCTATCGCCA TTCTCTCCAG AATCGCAAGC TTCGATTCCC ATAAAACCCT 
TATGTCTTCC TTTACCGATC CCCTTTTTCT GCGATCGCTT TACTCTCCTC 
GATCCATCGC CATCAGATTT CATGGAGATT TTGCTCATAG ACTCTACAAT 
CCCATTCAAA TTTACAACAA CAACAACAAC AACAGTGGCT CTTGTAATGG 
TTTGTTCAAG GTTAAAGGTG GAGGAGGAAA GCCGAAAGGA TTCACCTTGC 
GAAGTTGTTT TGATTCTCAT AAGAAACCTG ATCAAAAGGC TCGAGCTTTA 
ACTCAACATC GCCGCTTTCT CCATGATCTG GGATCTGGGC CTAGTGAAGA 
ACGCGCCGCT GCCGGAACTA CCGACCTTGC CGATGGCCGT GGTGCATATC 
TGCGTACGAG GTTTCAAGGA AATGATAAGA TTGTTGTGGC TGTTGACATA 
GATGAGGTTC TTGGAAACTT TGTCTCGGCC CTTAACAGAT TCATTGCGGA 
CCGCTATTTG TCGAACCATT CAGTCTCAGA ATACCATGTC TATGAGTTCT 
TCAAGATATG GAACTGCTCT CGCAACGAAG CCGACTTACG TGTTCATGAA 
TTCTTTAAGA CATCATATTT CAAGAAAGGG ATCCATCCTC TTCCAGGTGC 
CCATAAGACT CTTCACAAGC TATCAAAATA TTGCGACATG TCAGTTGTGA 
CGTCCCGGCA GAATGCGATA AAGGAGCACA CACTTGAGTG GATCGAGATA 
CATTTCCCGG GACTATTTAA ACAGATTCAT TTTGGGAACC ATTTTGCTCT 
TCATGGAGAG TCTAGACCAA AGTCTGAAAT CTGCAGATCA TTTGGAGCAG 
AGATATTGAT TGACGATAAC CCAAGATATG CCGAGGAATG CGCTAACATT 
GGAATGAAGG TTCTCCTCTT TGACTATGAA AATTCATACC CTTGGTCTAA 
GACAGAGTCT GTGGATCGGC ATCCTTTGGT GACTAGAGTT CATAATTGGG 
AAGAGGTGGA GCAGCAGATT CTCTCATTGG CAGTGTCAAA GTGTTAAATA 
TTTTCTGCAA CAAGAAATGT TATTTTGCCA GTGCAGAATT ATAGTATTGT 
ACAAACTTGA TGGGAGAAAT AAGTAGCAAA CAGAGATGGA ATTAGCTTTA 
ATTGTCCCTT TTTAGCATCA TTTCAATCTA TTTTTTTTTA TAATTTAGTT 
TTGTTGTTGC AAATACATTT GATCTGATGT ATATAAATTA AATAAAGTTT 
TTATTTCAAA TCC

Gene models with high sequence identity

  1. AT4G33140.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam NT5C 1.3e-16
superfamily HAD-like 6.5e-14

See the detailed result >

AT4G33140.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5'(3')-deoxyribonucleotidase (InterPro:IPR010708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-A15 introduced

  • F14831 - Specific phenotypes were NOT observed.
  • F21523 - Specific phenotypes were NOT observed.
  • F22201 - rosette leaf::increased size / stem::increased thickness / cauline leaf::increased size / stem::abnormal / rosette leaf::desaturated green / rosette leaf::increased width
  • F24029 - rosette leaf::dark green / rosette leaf::dark green / stem::increased thickness / cauline leaf::dark green / whole plant::decreased height
  • F25044 - Specific phenotypes were NOT observed.
  • F25237 - Specific phenotypes were NOT observed.
  • F26042 - Specific phenotypes were NOT observed.
  • F27548 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found