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  3. RAFL09-48-B14

RAFL09-48-B14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06369)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-B14 - full reading 
GAACCTTTAA AACTCAGATT TTATCTCTCT TCAGTCTCCA CGCTGCTTGA 
AACTGAAGCA GAGAAGCAAA GAGATGTCTT TTGAGGAGTT TACGCCGTTA 
AACGAGAAGT CTCTTGTAGA CTACATCAAG TCAACACCTG CTCTCTCTTC 
CAAGATCGGA GCCGACAAGT CCGATGATGA TTTGGTTATC AAAGAAGTTG 
GAGATGGCAA TCTCAATTTC GTTTTCATCG TTGTTGGATC CTCTGGTTCT 
CTTGTCATCA AACAGGCTCT TCCATATATT CGCTGTATCG GTGAATCATG 
GCCAATGACG AAAGAAAGAG CTTATTTTGA AGCAACAACT TTGAGAAAGC 
ATGGAAATTT ATCACCTGAT CATGTTCCTG AAGTCTACCA TTTTGACAGA 
ACAATGGCGT TGATTGGAAT GAGATACCTT GAGCCTCCTC ATATCATTCT 
CCGCAAAGGA CTCATTGCTG GGATTGAGTA TCCTTTCCTC GCAGACCACA 
TGTCTGATTA CATGGCGAAG ACTCTCTTCT TCACTTCTCT CCTCTATCAC 
GATACCACAG AGCACAGAAG AGCAGTAACC GAATTTTGTG GTAATGTGGA 
GTTATGCCGA TTAACGGAGC AAGTTGTGTT TTCGGACCCA TATAGAGTTT 
CCACATTTAA TCGTTGGACT TCACCTTATC TTGATGATGA TGCTAAGGCT 
GTGCGCGAAG ACAGTGCCTT GAAGCTCGAA ATCGCAGAGC TAAAATCGAT 
GTTCTGTGAA AGAGCTCAAG CTTTAATACA TGGTGATCTT CATACTGGTT 
CTGTCATGGT TACTCAAGAT TCAACGCAAG TTATAGATCC AGAGTTTTCG 
TTCTATGGAC CGATGGGTTT CGATATTGGC GCTTATCTTG GTAACTTGAT 
ACTAGCTTTC TTTGCACAAG ATGGACACGC CACTCAGGAA AATGATCGAA 
AAGAATACAA GCAGTGGATC TTGAGAACCA TTGAGCAAAC TTGGAATTTG 
TTTAACAAAA GGTTCATTGC GCTATGGGAT CAAAACAAAG ATGGACCAGG 
CGAAGCATAC CTTGCAGATA TCTATAACAA TACCGAGGTT TTGAAGTTTG 
TTCAAGAAAA CTACATGAGG AATTTGTTGC ATGACTCACT CGGATTCGGC 
GCTGCAAAGA TGATTAGGAG AATTGTGGGA GTGGCACATG TTGAGGACTT 
TGAATCAATC GAAGAAGATA AGCGAAGAGC TATTTGCGAG AGAAGTGCAC 
TCGAGTTTGC GAAGATGCTT CTCAAGGAAA GGAGAAAGTT TAAGAGTATC 
GGTGAAGTTG TTTCAGCAAT TCAACAACAA AGCTAAGACA ATTTATAATG 
TTCTTCTGCT GAAGTTCTTG AAAGTCTTGT TTTGATCTTG GGAGTTAATT 
GGCAAGAAAA GTATCACAAT GCTGCTTATC ACATGGATTT GTAATTTAGT 
GGTTTGTGGT GGTGATGATG GTATTCAAAT GCATTTTGTT ACAATAATAA 
TAATAAAAGT TTAGAAATAT TTTCACTAG

Gene models with high sequence identity

  1. AT1G49820.1 [+] show detail - S-methyl-5-thioribose kinase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Methylthioribose kinase 2.1e-259
HMMTigr Methylthioribose kinase 2.5e-141
HMMPfam Aminoglycoside phosphotransferase 3.5e-16
superfamily Protein kinase-like domain 3e-10

See the detailed result >

AT1G49820.1

Model type
Protein coding
Short Description
S-methyl-5-thioribose kinase
Curator Summary
encodes 5-methylthioribose kinase, involved in methionine cycle
Computational Description
S-methyl-5-thioribose kinase (MTK); CONTAINS InterPro DOMAIN/s: Methylthioribose kinase (InterPro:IPR009212), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); Has 954 Blast hits to 954 proteins in 299 species: Archae - 0; Bacteria - 750; Metazoa - 4; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-B14 introduced

  • F09230 - seed::increased size / seed::increased length
  • F13546 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found