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  3. RAFL09-48-D13

RAFL09-48-D13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06376)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-D13 - full reading 
ATCTTCTCTG GAAACTGAAA ACTATGGCTT TCTCTTCATG TCTCAAATTC 
TATCCATTTT CTATCTCTCA AGCTGTAACC CTAACTCATC ATTCCTTCTC 
TCTCAATCTA ACTCCTCCTT CTTCTACCAT CTCCTTCGCT TCTCCTCACT 
CAGCAGCTCT CTCCTCTACC GATGTCAAGC TTCTCGACTC ACTCCGTAGC 
CAGCCTGATG ATTCCGCCGC ACTTCGTCTC TTTAATCTGG CCTCTAAGAA 
GCCAAATTTC TCACCTGAAC CTGCTCTATA CGAAGAGATT CTCCTTCGGC 
TAGGTCGGTC TGGTTCGTTT GATGACATGA AGAAAATTCT TGAAGACATG 
AAGAGTTCCA GATGCGAAAT GGGTACTTCT ACTTTCTTGA TATTAATCGA 
GAGTTATGCT CAGTTCGAAT TGCAAGATGA GATTTTAAGT GTTGTTGATT 
GGATGATTGA CGAATTCGGG TTAAAACCCG ATACCCATTT TTATAACCGG 
ATGTTGAATC TTCTCGTTGA TGGGAATAGT CTGAAACTCG TTGAGATTTC 
TCACGCGAAG ATGAGTGTCT GGGGGATTAA ACCAGATGTA TCTACGTTTA 
ATGTTTTGAT CAAAGCTTTG TGTAGAGCTC ATCAGCTTAG ACCTGCGATT 
TTGATGTTGG AGGATATGCC TAGTTACGGT CTTGTTCCTG ATGAGAAGAC 
ATTTACAACG GTTATGCAAG GCTATATTGA AGAAGGGGAC TTGGATGGAG 
CTTTGAGGAT TAGGGAACAG ATGGTTGAGT TTGGTTGTTC ATGGTCTAAT 
GTGAGTGTTA ATGTTATTGT TCATGGTTTT TGTAAGGAAG GGAGAGTCGA 
AGACGCTCTC AATTTCATTC AGGAGATGTC TAATCAAGAC GGGTTTTTTC 
CGGATCAGTA CACGTTTAAT ACGTTAGTTA ATGGTTTGTG TAAAGCAGGG 
CATGTGAAGC ATGCTATTGA GATTATGGAT GTGATGCTTC AAGAAGGGTA 
TGATCCAGAT GTGTATACTT ATAACTCGGT GATTTCGGGT TTGTGTAAGC 
TTGGAGAGGT GAAAGAAGCA GTGGAGGTTC TTGATCAGAT GATTACTAGA 
GATTGTTCTC CGAACACGGT TACTTACAAC ACTTTGATCA GCACGTTATG 
TAAAGAGAAT CAGGTCGAGG AAGCTACGGA GCTTGCCCGT GTTCTCACCA 
GCAAAGGGAT CCTTCCTGAC GTTTGTACAT TTAACTCTTT GATCCAAGGT 
TTGTGTTTGA CTAGGAATCA CCGGGTTGCG ATGGAGTTGT TTGAAGAGAT 
GAGGAGCAAA GGATGTGAGC CTGACGAGTT CACTTACAAT ATGCTGATTG 
ATAGCTTATG CTCCAAAGGG AAGCTAGATG AAGCTCTGAA CATGCTTAAA 
CAAATGGAAT TGAGTGGTTG TGCACGGAGT GTGATAACTT ACAACACTTT 
GATTGATGGG TTTTGCAAAG CCAACAAGAC TAGAGAAGCC GAGGAGATAT 
TTGATGAGAT GGAAGTACAT GGAGTTTCAA GAAACTCTGT TACATACAAC 
ACACTCATCG ATGGGCTTTG TAAAAGCAGG CGAGTAGAGG ACGCGGCTCA 
GCTCATGGAT CAAATGATTA TGGAAGGACA GAAACCTGAC AAGTACACAT 
ACAACTCGCT TTTAACACAT TTCTGCAGAG GAGGTGACAT AAAGAAAGCT 
GCGGATATCG TGCAAGCCAT GACCTCAAAT GGGTGTGAAC CAGACATTGT 
GACCTATGGA ACCTTGATAA GCGGTTTGTG TAAAGCTGGT AGAGTTGAAG 
TTGCAAGTAA GCTTTTGAGG TCAATTCAGA TGAAAGGGAT TAATTTGACA 
CCGCATGCTT ATAATCCGGT GATTCAAGGG TTGTTTAGAA AGAGGAAAAC 
AACAGAAGCT ATAAATTTGT TTAGAGAAAT GCTTGAACAG AATGAAGCTC 
CACCAGATGC AGTATCCTAC AGAATCGTTT TCCGTGGGCT ATGTAATGGA 
GGTGGACCAA TCCGTGAAGC AGTGGACTTT CTTGTTGAGC TGTTAGAGAA 
AGGATTTGTA CCTGAGTTTT CTTCTTTGTA CATGTTGGCT GAAGGTCTTC 
TCACTTTGTC AATGGAAGAA ACACTAGTCA AGTTAGTGAA CATGGTGATG 
CAGAAAGCTA GATTCTCGGA GGAAGAGGTT TCAATGGTGA AAGGTTTGCT 
TAAAATCAGG AAATTTCAGG ACGCTTTGGC CACTCTTGGC GGCGTCTTGG 
ACAGTCGCCA GCCGAGGAGA ACCTACCGGT CAAGATGATA GATACCTTTA 
GAAAAAGTAT CGTTCCCAAT TTCGTAGAAG ATATGTATGA TGTTATGAAT 
ATGATTTCCT ATAAAGTTTT GGGGTAATTC ATCCATTTAA TAC

Gene models with high sequence identity

  1. AT3G53700.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Pentatricopeptide repeat 7.991
ProfileScan Pentatricopeptide repeat 6.456
ProfileScan Pentatricopeptide repeat 11.488
ProfileScan Pentatricopeptide repeat 7.169
ProfileScan Pentatricopeptide repeat 10.654
ProfileScan Pentatricopeptide repeat 9.438
ProfileScan Pentatricopeptide repeat 12.858
ProfileScan Pentatricopeptide repeat 14.02
ProfileScan Pentatricopeptide repeat 11.948
ProfileScan Pentatricopeptide repeat 13.022
ProfileScan Pentatricopeptide repeat 12.671
ProfileScan Pentatricopeptide repeat 13.022
ProfileScan Pentatricopeptide repeat 13.57
ProfileScan Pentatricopeptide repeat 12.463
ProfileScan Pentatricopeptide repeat 11.466
ProfileScan Pentatricopeptide repeat 10.501
ProfileScan Pentatricopeptide repeat 10.073
HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.5e-187
HMMPfam Pentatricopeptide repeat 0.0035
HMMPfam Pentatricopeptide repeat 5.4e-05
HMMPfam Pentatricopeptide repeat 6.4e-05
HMMPfam Pentatricopeptide repeat 1.2e-06
HMMPfam Pentatricopeptide repeat 4.8e-09
HMMPfam Pentatricopeptide repeat 0.00013
HMMPfam Pentatricopeptide repeat 1.3e-07
HMMPfam Pentatricopeptide repeat 2.6e-08
HMMPfam Pentatricopeptide repeat 1.1e-10
HMMPfam Pentatricopeptide repeat 5e-08
HMMPfam Pentatricopeptide repeat 3.5e-05
HMMPfam Pentatricopeptide repeat 1.8e-06
HMMPfam Pentatricopeptide repeat 0.00066
superfamily TPR-like 1e-23
superfamily TPR-like 3.5e-18
HMMTigr Pentatricopeptide repeat 0.013
HMMTigr Pentatricopeptide repeat 1.4
HMMTigr Pentatricopeptide repeat 1.6
HMMTigr Pentatricopeptide repeat 6.2e-07
HMMTigr Pentatricopeptide repeat 6.1e-06
HMMTigr Pentatricopeptide repeat 3.8e-07
HMMTigr Pentatricopeptide repeat 8.8e-10
HMMTigr Pentatricopeptide repeat 1.1e-11
HMMTigr Pentatricopeptide repeat 3.1e-07
HMMTigr Pentatricopeptide repeat 9.1e-11
HMMTigr Pentatricopeptide repeat 8.2e-10
HMMTigr Pentatricopeptide repeat 1e-11
HMMTigr Pentatricopeptide repeat 8.3e-11
HMMTigr Pentatricopeptide repeat 5.9e-10
HMMTigr Pentatricopeptide repeat 2.3e-07
HMMTigr Pentatricopeptide repeat 2.5e-05
HMMTigr Pentatricopeptide repeat 0.12

See the detailed result >

AT3G53700.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-D13 introduced

  • F11043 - Specific phenotypes were NOT observed.
  • F13440 - Specific phenotypes were NOT observed.
  • F17234 - seed::increased size / seed::increased length
  • F22326 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found