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  3. RAFL09-48-H04

RAFL09-48-H04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06387)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-H04 - full reading 
ATAAGCGCCA TTGCAGCGGG CTTACGAAAA CTTTTAAGAA AACTTCTGGA 
AGCGGAAAGC GGACCTCCGA CGAAATTTCC AAGGCTACGA CGGGCCGCGC 
GCGGGTTATT TGGGCTTTCT CAGTTCAAAC CTTTGAGTTA CCCGCTCTCT 
CTTCTTGCTC CAATCAATCT TCAGTCCACA AAATCTGAAA TCCACTTTAT 
CTATTTTAGA TTATTAGGTT CACTCACCAT TTTCATGGCA AAACCAAAAT 
CCAATTCTCA TCTCTCGTGG CAGGATTACT TGAAAACTGT TGCCCCCACT 
CAGATTTTGT CTGAACGAGG AGCTAATCTC GTTGTCATCA ACTTAGGGTC 
TGCTAATGTA AGAGTAGGAT TGGCTATGGA TGAGAAACCT TTCAATGTTC 
CTAATTGTAT TGCAAGATAC ATTACACAAT CTGGGAAACC AACTGTTGTT 
GATCAGATGC TTAACACTGA GGTCACTACT AATCAACATG TTGACCGTGA 
GAGAGCTTAT AATTCTGCGG CATCGCTGTT GAAGATACTG TTCCTGGATG 
AAAGTTCTTC TTCTGGCTCT GCATCTCGCA AGATGGGGAG GATCGACGGA 
TACAATCAAG CGAGTACGAT AAAGAAAGAT TCAGTCTTTA CTTGGACTGA 
TGTGTATGAG GATGAGAAAA TTTCTCTTGC CTCACCAGCA GAAACTTCTC 
CTGATAAAGG TGATGCTAGT GCATCTGAAG CTGTTCCTGA TGTTACTGAC 
TCTAAAGATA CTAGTGAGAG TAAACGCAAG TATAGGAAAA TGATTTTTGG 
TGAAGAAGCT TTGAAAATAT CGCCAAAAGA GCCATATTGT TTATACCATC 
CTATTCGGAG AGGTCACTTC AATGTTTCGC CACATTATTC AGCGCAACGG 
GTTTGTGAGG ACTTAACTGC TATCTTGGAC TGGATTTTAT TAGAGAAACT 
TCATATAACT CACAAGGAGA GATTCTCTTT TCATGCTGTT ATTGTTGTCC 
CAGAAACATT TGACACCCGC GAAATAAAGG AAATGCTAAC TATTGTGTTG 
GGAGAGCTAT ACTTTAACTC AGCAGTTGTC CACCAAGAAG GTCTATCGGC 
CGTTTTTGGG AATGGTTTGA CAACAGCTTG TATTGTGAAT ATAGGAGCCC 
AGACAAGTAC AGTAGTTTGT GTCGAGGATG GGGTCTCATT GCCAAATACT 
GAAAAGATTT TACCTTTTGG AGGAGAGGAT ATATGTAGAT GCCTTCTATG 
GATTCAGAGG CATTACCAAA AGTGGCCACA AATCAACACA GATGTTTTGG 
CAAAGCCAAT CGATATGCTG ATGCTTAATC AACTTAAGGA GTCATTTTGT 
GAAATTAGAG CAGGAGAACT TGAAACTGTT GCAACGGTTC ATTCTTATGA 
GGAAGGCATG CCAGCTGTGC CTCACAAGAC AAATCTCACC TCCCTTAACG 
TTCCACCAAT GGGTCTGTTT TATCCTAACC TTTTGGTCCC TGAAATATTT 
CCCCAGCCAC CACGTCAATG GTTTCAAGAC TACGAGAATA TGTTGGAAGA 
CACTTGGAAC ATGGACTTTG GAGGTGGTGG TAACATGGGA TTACCAATGT 
GGGATAGTTT TGCATTTTCG CCTTCAAAAC CAAAGAAAGA AGAGAAGATT 
GGTCTCGCTG AAGCCATTAC AAGCAGCATT CTCTCTGCTG GACGCATAGA 
CCTTAGACGG AAGCTTTTCT CCAGCATTCA ATTGATTGGT GGTGCTGGTT 
TGACGAAAGG TCTTGTAGCG GCAGTGGAAG AAAGAGTTCT TCACGCGATA 
CCTCCAACTG AAGCCATTGA TACAGTGCAG GTTCTGCCAT CAAGAACGGA 
GCCACAATTC GTAACTTGGA AAGGAGGAGC GATATTGGGA ATTCTGGACT 
TTGGGAGGGA GGCTTGGATT GAGAGACATC AATGGATGGT AAATGGGGTT 
AATAAAGGTG GTCTAAAGAA GTACAAAGAC TCTTATCACC TTCAAGGTCA 
AGCAATGTAC TTCATCAACC CCTAGTTTCT GTCTATATCT TAAGCTTTCT 
CTGTTTCTTA TCAGAATACT TTTACTTGTC ATAACTCAAA ACCAAAAACA 
AAAATTCTCA GAGTAAATGT TATTTTGCC

Gene models with high sequence identity

  1. AT5G43500.1 [+] show detail - actin-related protein 9
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ACTIN-RELATED PROTEIN 6, ARP6 2e-145
HMMPanther Actin/actin-like 2e-145
HMMSmart Actin/actin-like 2.1e-09
HMMPfam Actin/actin-like 2.1e-24
Gene3D no description 4.6e-09
superfamily Actin-like ATPase domain 5.4e-34
superfamily Actin-like ATPase domain 7.8e-15

See the detailed result >

AT5G43500.1

Model type
Protein coding
Short Description
actin-related protein 9
Curator Summary
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
Computational Description
actin-related protein 9 (ARP9); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-H04 introduced

  • F13336 - Specific phenotypes were NOT observed.
  • F14933 - seed::increased size / seed::increased length
  • F18913 - Specific phenotypes were NOT observed.
  • F24710 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / whole plant::decreased height

Mutant lines with disrupted or induced

5 mutant lines found