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  3. RAFL09-48-J19

RAFL09-48-J19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08414)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-J19 - full reading 
TTTTCTTTTT TTTTGATTTA AACCAAAAGG GTAAACAATG CTTTATGATT 
GCTTAGTGAC GCCATTGAAG CAGCGGCTCA CTGATAGTGG CTTCTTCTGC 
CTCCAATTCC AAGTGGATTT TGTTTCACTC ACTCATCGTC GTTGATCAGT 
GACTCTGTTT TTGCGAAATT CTCTTCAGAT TTCTTGATAA AAGATAGAAG 
ACGGAATTAT GAGTGGAGCT GTGCTTGTTG CTATTGCTGC TGCTGTTGGC 
AACTTGTTAC AAGGATGGGA TAACGCAACT ATTGCAGGAG CTGTGTTGTA 
CATAAAAAAG GAGTTTAATT TGGAGAGTAA TCCATCAGTG GAAGGTCTAA 
TTGTGGCGAT GTCACTTATT GGTGCTACTC TGATTACAAC ATGCTCTGGA 
GGGGTAGCTG ATTGGCTTGG TCGCCGTCCC ATGCTAATAT TGTCCTCAAT 
TCTCTACTTT GTTGGTTCTC TAGTAATGCT ATGGTCTCCG AATGTTTATG 
TGTTGCTCTT AGGAAGGTTG TTAGATGGAT TTGGGGTTGG TCTTGTGGTC 
ACACTTGTTC CTATTTATAT ATCTGAGACT GCACCACCTG AGATTAGGGG 
ACTGTTGAAT ACGCTACCGC AGTTCACTGG CTCTGGAGGG ATGTTCTTAT 
CTTACTGTAT GGTTTTCGGA ATGTCGTTGA TGCCATCACC TAGCTGGAGA 
TTGATGCTTG GTGTCCTTTT CATCCCTTCC CTTGTCTTTT TCTTCCTCAC 
GGTCTTCTTC TTGCCCGAGT CCCCAAGGTG GCTCGTGAGC AAAGGTCGAA 
TGCTTGAAGC AAAGCGGGTT CTTCAGAGAC TGCGTGGTCG CGAAGATGTG 
TCTGGTGAGA TGGCTTTGTT GGTTGAGGGT CTTGGAATTG GAGGTGAAAC 
AACCATAGAG GAATATATAA TTGGTCCCGC GGATGAAGTT ACTGATGATC 
ATGATATAGC TGTGGATAAG GATCAAATTA AGTTATATGG TGCAGAAGAA 
GGGCTGAGTT GGGTTGCTAG GCCAGTCAAA GGAGGAAGCA CTATGAGTGT 
TTTGTCTCGC CATGGAAGTA CAATGAGCAG GAGGCAAGGC TCATTGATTG 
ATCCTCTTGT CACACTGTTT GGGAGCGTTC ACGAGAAGAT GCCGGACACT 
GGAAGCATGA GGAGTGCCTT GTTCCCACAT TTTGGGAGTA TGTTCAGTGT 
TGGAGGGAAT CAACCAAGAC ATGAAGATTG GGATGAAGAG AATCTTGTTG 
GAGAAGGTGA GGATTATCCA TCCGACCATG GAGATGATTC TGAAGATGAT 
CTTCATTCTC CGTTGATCTC ACGTCAAACG ACAAGCATGG AGAAAGACAT 
GCCTCACACT GCTCATGGAA CTCTTTCTAC CTTCAGACAT GGAAGTCAAG 
TGCAGGGAGC TCAAGGGGAA GGAGCGGGTA GTATGGGGAT TGGAGGTGGA 
TGGCAAGTGG CATGGAAATG GACGGAAAGA GAAGATGAAT CGGGACAGAA 
AGAAGGTGGG TTTAAACGGA TATACTTGCA TCAAGAAGGT TTCCCAGGAT 
CTCGACGTGG CTCAATTGTT TCATTGCCTG GTGGTGATGG AACCGGTGAG 
GCAGATTTTG TACAAGCGTC TGCTTTGGTT AGCCAACCAG CTCTTTATTC 
CAAAGACCTT CTCAAAGAAC ATACAATTGG TCCTGCTATG GTACATCCAT 
CCGAAACAAC TAAAGGGTCA ATTTGGCATG ATCTTCATGA TCCTGGAGTC 
AAGCGTGCAT TAGTCGTAGG AGTTGGACTT CAAATACTTC AGCAGTTCTC 
AGGCATCAAC GGAGTTCTTT ACTACACACC GCAAATCCTT GAGCAGGCGG 
GTGTCGGGAT CCTACTATCG AACATGGGGA TTAGTTCTTC CTCAGCATCC 
TTACTTATAA GTGCATTGAC AACCTTTGTG ATGTTACCTG CAATAGCTGT 
TGCAATGAGG CTCATGGATC TTTCTGGTCG AAGGACCTTG CTTCTCACCA 
CGATACCAAT CCTGATAGCA TCTCTATTGG TTTTAGTAAT CTCAAATCTT 
GTTCACATGA ACAGCATTGT GCACGCGGTC TTATCAACCG TAAGCGTTGT 
GCTCTACTTC TGCTTCTTCG TGATGGGTTT CGGTCCTGCT CCAAACATCC 
TCTGTTCAGA GATTTTTCCA ACTCGAGTCC GCGGAATCTG CATCGCCATC 
TGCGCACTCA CCTTCTGGAT CTGTGACATA ATCGTCACTT ACAGTCTCCC 
CGTGCTGCTC AAATCCATTG GACTAGCTGG TGTGTTTGGA ATGTACGCAA 
TCGTATGTTG CATTTCATGG GTCTTTGTGT TCATTAAAGT CCCGGAAACT 
AAAGGCATGC CACTTGAAGT CATCACAGAG TTCTTTTCTG TTGGAGCTAG 
ACAAGCTGAA GCTGCTAAAA ACGAGTGAGA AACTGAAAGA CTTGTTGAGA 
TAAAAAGTTT GTGTAATATT CATGTGGATT TGTTGTTGTC TTTTTACTTT 
GTGCAGTAAT AATCATCTCT CTCTGTTTCG TCTTCTTCAT GTGGGGAGAA 
AAAAAAGTTT CAAACTTTCT

Gene models with high sequence identity

  1. AT4G35300.1 [+] show detail - tonoplast monosaccharide transporter2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Sugar/inositol transporter 4.7e-18
FPrintScan Sugar/inositol transporter 4.7e-18
FPrintScan Sugar/inositol transporter 4.7e-18
FPrintScan Sugar/inositol transporter 4.7e-18
FPrintScan Sugar/inositol transporter 4.7e-18
HMMPanther SUGAR TRANSPORTER 7.5e-132
HMMPanther SUGAR TRANSPORTER 7.5e-132
PatternScan Sugar transporter, conserved site 0
PatternScan Sugar transporter, conserved site 0
superfamily Major facilitator superfamily, general substrate transporter 7.1e-69
ProfileScan MFS 35.091
HMMPfam General substrate transporter 2.3e-53
HMMPfam General substrate transporter 6.3e-40

See the detailed result >

AT4G35300.1

Model type
Protein coding
Short Description
tonoplast monosaccharide transporter2
Computational Description
tonoplast monosaccharide transporter2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: response to fructose stimulus, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter3 (TAIR:AT3G51490.2); Has 51368 Blast hits to 39283 proteins in 2480 species: Archae - 776; Bacteria - 26387; Metazoa - 6850; Fungi - 11680; Plants - 3625; Viruses - 0; Other Eukaryotes - 2050 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-J19 introduced

  • F25236 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found