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  3. RAFL09-48-J22

RAFL09-48-J22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17755)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-J22 - full reading
GATGCTTTCT TCAATATCAT TCTAAAAATA CTTTCTTCAC GTGCAAGCAT 
TTGTGATCTC TCATGGCTTC TTCTTCTTCT TCATCTTCTT CGTCTCACAT
AAGGAGACAC CATGTCTTTT CGCGCTTCCA CGGTCCAGAT GTCCGTAAAG
GGTTTCTCAG TCATTTACAC AGTCTCTTTG CAAGCAAAGG TATCACGACT
TTCAATGATC AGAATATCGA GAGAGGCCAG ACGATCGGAC CTGAGCTCAT
ACAAGGGATT AAAGAAGCTA GAGTCTCGAT CGTTGTGCTC TCGAAGAATT
ACGCTTCTTC CAGCTGGTGT TTAGATGAAC TTGTGGAAAT CTTGAAGTGC
AAAGAAGCTT TGGGGCAGAT TGTGATGACG GTTTTTTTTT AAGTTGATCC
GTCAGATGTT AAGAAACAGA GTGGAGTGTT CGGGAAAGCT TTTGAGAAGA
CTTGTCAAGG GAAAAATGAG GAGGTGAAGA TCCGATGGAG AAATGCTTTG
GCACATGTCG CTACCATTGC TGGGGAACAC TCTCTTAATT GGGATAATGA
AGCAAAGATG ATCCAAAAGA TTGCTACAGA TGTTTCAGAC AAACTGAATC
TCACACCGTC GAGGGATTTT GAGGGGATGG TAGGGATGGA AGCTCACTTG
AAAAGATTGA ACTCTTTGTT ATGCCTGGAA AGTGATGAAG TCAAGATGAT
TGGAATTTGG GGTCCAGCGG GAATTGGTAA GACTACCATT GCTAGAGCTT
TATTCGACGA CAGACTCTCT AGCAGTTTTC AACATAAATG TTTTATGGGG
AACCTCAAGG GAAGTATTAA GGGTGTTGCT GACCATGATT CCAAGTTGAG
GTTGCAAAAG CAACTTCTGT CTAAGATTTT TAAGGAAGAG AATATGAAGA
TACATCATTT AGGCGCAATA CGAGAAAGGC TACACGATCA AAGAGTGCTC
ATCATTCTTG ACGATGTAGA TGATCTAAAG CAATTAGAGG TATTGGCTAA
AGAAATCTCT TGGTTTGGTT CTGGAAGCCG AATCATCGGT ACCACAGAAG
ATAAGAAGAT TTTGAAGGCA CATGGGATTC ACAATATCTA CCGTGTGGAT
TTTCCATCGA AGAAAGACGC TCTTGAGATC TTATGTCTCT CTGCATTCAA
ACAAAGCTCT ATACCAGATG GTTTTGAAGA GCTTGCCAAT AAAGTAGCTA
AGCTTTGCAG CAACCTTCCA TTAGGCCTTT GTGTCGTGGG TGCATCTTTG
CGTGGGGAGG GCAATCAAGA GTGGGAACGT CTATTATCTA GGATCGAATC
TAGTCTTGAT AGGGATATCG ATGACATATT ACGAATCGGA TATGACAGAT
TGTTGACGAA TGATAAATCT CTATTCCTTC ACATTGCATG CTTCTTCAAC
TATGCAAAGG TTGATAATGT GACAGCCTTG TTAGCTGACA GTAACTTGGA
TGTTGGAAAT GGTTTCAATA CCCTAGCCGA TAGATCTCTC GTGCGTATAT
CTACCTATGA TGATGGGATA TCTGTGCTTT CTGATAGTAA CTTGGATGTT
GGAAATAGTT TTAAGACCCT AGCAGATAAA TTTCTCATGC ATACTTCCCT
ACGGCCGAAT AGAGATGCAC CATCTACTAC AACAATTGGG TAGACAGATA
GTTCTTGAAC AGTCTAAGGA GCCCGGGAAA CGTGAATTTA TAATTGAGCC
AGAAGAGATT CGTGATGTAC TGACAAATGA AACAGGTACT GGATCAGTCA
TTGGTATATC ATTTGATACA TCCAATATCG GAGAGGTTTC TGTAAGTAAG
GATGCTTTTG AAGGAATGCG AAATCTCCGT TTCCTAAGAA TCTATAGGTT
GTTAGGTGGT GAAGTTACTT TGCAAATACC AGAAGATATG GATTATATAC
CTCGTCTTAG GTTACTATAT TGGGATCGCT ATCCAAGAAA AAGTCTTCCT
CGGAGATTCA AGCCGGAACG TCTCGTGGAA CTCCATATGC CACGCAGCAA
TCTCGAGCTG CTCTGGGGAG GAATCGAGCC CCTTCCTAAT CTCAAGATCA
TAAATCTGAA CCGATCCTAT AGGTTGAAAG AAATCCCAAA TCTTTCGAAA
GCCACTAATC TCGAGAGATT GACACTTGAG AGCTGCTTAA GTTTGGTGGA
GCTTCCCTCT TCTATTTCTA ATCTACACAA ACTGGAGATT CTAGATGTTA
AATTCTGCTC TATGCTACAA GTTATTCCCA CCAACATCAA CTTAGCATCT
CTTGAGAGAC TCGACGTGAG TGGTTGCTCA CGATTGAGAA CTTTTCCAGA
TATCTCCAGT AACATCAAGA CACTCATTTT CGGAAATATA AAGATAGAAG
ATGTCCCTCC ATCAGTTGGA TGTTGGTCTC GTCTTGATCA ACTTCACATT
AGCAGCCGAA GCCTCAAGAG ATTGATGCAT GTACCACCAT GTATAACTTT
GCTATCTCTG AGAGGTAGTG GTATAGAGAG GATTACAGAT TGCGTCATAG
GTCTCACTCG TCTACATTGG CTGAATGTCG ATAGCTGCAG AAAACTCAAG
TCAATTCTGG GTCTCCCCTC CTCCCTCAAG GTCCTAGATG CAAATGATTG
TGTATCACTC AAGAGAGTAC GCTTCTCTTT CCATAACCCA ATGCACACAC
TCGATTTCAA CAACTGTTTG AAACTGGATG AAGAAGCAAA AAGAGGAATC
ATACAACGAT CAGTGTCCAG GTACATATGC TTACCATGTA AAAAGATCCC
TGAAGAGTTC ACTCACAAAG CAACAGGCAA ATCCATAACC ATCCCTCTGG
CACCTGGTAC TCTCTCTGCT TCCTCAAGGT TTAAGGCTTC CATTCTCATT
TTGCCAGTTG AGAGCTACGA AACTGAAGGT ATAAGTTGTA GTATAAGAAC
CAAAGGAGGT GTTGAAGTTC ATTGCTGCGA GCTTCCATAT CACTTTTTGC
GTGTTCGGTC AGAACACCTG TTTATATTTC ATGGTGACTT GTTTCCCCAA
GGAAACAAAT ACCATGAAGT GGATGTGACT ATGAGCGAGA TTACATTTGA
GTTCAGCCAC ACTAAAATCG GTGACAAGAT TATTGAGTGT GGTGTACAGA
TCATGACAGA GGGAGCTGAG GGTGACAGTA GCAGGGAATT GGAAGTTTTG
AAACTGAGAG TAGCAGCAGC CCAGTTGGGA GATTTGTTGG GAAATTTGAA
TTTGGAGGCA ACAACAATCA CCACACAGAT GGAAATGGAG ATGGAAACTA
TGAAGCAGAA GGTTCCAAGT TCTCTCAAGA TGAAAACATC AAAACCAGCA
AACGTTGGTT TTATGAGTTG GCTTCGGAAG CTTGGTCAGT GAAGAAGATG
AATTCTCATG GAGTCTCATG AAGACCAAAC CAGTTTTTGG CACTTTCTTA
GCTCCTTAAT CATCTTCATA AGGTAGGAGA TTGGGAATTT CGACGCAGCA
CCTGATTCTC CAGTGATCAA ATCTAAGTCC ACACAAAGAG ACCATATTGT
CCAATCAGTT CCAGATACTT GGTGCATTGC CTTCTGTTGT GAGCATAAAA
CGGCAAACCC TATGAAAGAA GGTTGATAGC ATTAGAGAAA ACAGAGCATT
GCAGCTCACA CAGTCCACCC ATGAACTGAT GATTTTTCCG GATTGATTGC
ATCTTAGAAT CATAATCCTG TTTCCATTGG CCTTAATTAG CTGTTTAAGT
ACTAAGAAAA GTCTTGTTAC CTTGTGATCT AGTTAATTAG CTGTTTAAAT
ACTAAGAAAA ATCTTGTTAC CTTGTGAATT ACTTACAAAA

Gene models with high sequence identity

  1. AT5G41740.1 [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily L domain-like 6.7e-38
superfamily Toll-Interleukin receptor 5.1e-30
superfamily P-loop containing nucleoside triphosphate hyd 2.2e-21
superfamily "Winged helix" DNA-binding domain 0.000000011
superfamily Toll-Interleukin receptor 0.00000073
FPrintScan Disease resistance protein 2e-17
FPrintScan Disease resistance protein 2e-17
FPrintScan Disease resistance protein 2e-17
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00000029
HMMPanther WERNER HELICASE INTERACTING PROTEIN 0.00034
HMMPanther HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED 0.00034
Gene3D no description 1.6e-21
ProfileScan Toll-Interleukin receptor 19.832
HMMPfam Leucine-rich repeat 0.17
HMMPfam LRR_3 0.000024
HMMPfam Toll-Interleukin receptor 2.6e-25
HMMPfam NB-ARC 2e-38
HMMSmart Toll-Interleukin receptor 0.00000000000022
HMMSmart ATPase, AAA+ type, core 0.0026

See the detailed result >

AT5G41740.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-J22 introduced

  • F20845 - Specific phenotypes were NOT observed.
  • F21648 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found