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  3. RAFL09-48-J22

RAFL09-48-J22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17755)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-J22 - full reading 
GATGCTTTCT TCAATATCAT TCTAAAAATA CTTTCTTCAC GTGCAAGCAT 
TTGTGATCTC TCATGGCTTC TTCTTCTTCT TCATCTTCTT CGTCTCACAT 
AAGGAGACAC CATGTCTTTT CGCGCTTCCA CGGTCCAGAT GTCCGTAAAG 
GGTTTCTCAG TCATTTACAC AGTCTCTTTG CAAGCAAAGG TATCACGACT 
TTCAATGATC AGAATATCGA GAGAGGCCAG ACGATCGGAC CTGAGCTCAT 
ACAAGGGATT AAAGAAGCTA GAGTCTCGAT CGTTGTGCTC TCGAAGAATT 
ACGCTTCTTC CAGCTGGTGT TTAGATGAAC TTGTGGAAAT CTTGAAGTGC 
AAAGAAGCTT TGGGGCAGAT TGTGATGACG GTTTTTTTTT AAGTTGATCC 
GTCAGATGTT AAGAAACAGA GTGGAGTGTT CGGGAAAGCT TTTGAGAAGA 
CTTGTCAAGG GAAAAATGAG GAGGTGAAGA TCCGATGGAG AAATGCTTTG 
GCACATGTCG CTACCATTGC TGGGGAACAC TCTCTTAATT GGGATAATGA 
AGCAAAGATG ATCCAAAAGA TTGCTACAGA TGTTTCAGAC AAACTGAATC 
TCACACCGTC GAGGGATTTT GAGGGGATGG TAGGGATGGA AGCTCACTTG 
AAAAGATTGA ACTCTTTGTT ATGCCTGGAA AGTGATGAAG TCAAGATGAT 
TGGAATTTGG GGTCCAGCGG GAATTGGTAA GACTACCATT GCTAGAGCTT 
TATTCGACGA CAGACTCTCT AGCAGTTTTC AACATAAATG TTTTATGGGG 
AACCTCAAGG GAAGTATTAA GGGTGTTGCT GACCATGATT CCAAGTTGAG 
GTTGCAAAAG CAACTTCTGT CTAAGATTTT TAAGGAAGAG AATATGAAGA 
TACATCATTT AGGCGCAATA CGAGAAAGGC TACACGATCA AAGAGTGCTC 
ATCATTCTTG ACGATGTAGA TGATCTAAAG CAATTAGAGG TATTGGCTAA 
AGAAATCTCT TGGTTTGGTT CTGGAAGCCG AATCATCGGT ACCACAGAAG 
ATAAGAAGAT TTTGAAGGCA CATGGGATTC ACAATATCTA CCGTGTGGAT 
TTTCCATCGA AGAAAGACGC TCTTGAGATC TTATGTCTCT CTGCATTCAA 
ACAAAGCTCT ATACCAGATG GTTTTGAAGA GCTTGCCAAT AAAGTAGCTA 
AGCTTTGCAG CAACCTTCCA TTAGGCCTTT GTGTCGTGGG TGCATCTTTG 
CGTGGGGAGG GCAATCAAGA GTGGGAACGT CTATTATCTA GGATCGAATC 
TAGTCTTGAT AGGGATATCG ATGACATATT ACGAATCGGA TATGACAGAT 
TGTTGACGAA TGATAAATCT CTATTCCTTC ACATTGCATG CTTCTTCAAC 
TATGCAAAGG TTGATAATGT GACAGCCTTG TTAGCTGACA GTAACTTGGA 
TGTTGGAAAT GGTTTCAATA CCCTAGCCGA TAGATCTCTC GTGCGTATAT 
CTACCTATGA TGATGGGATA TCTGTGCTTT CTGATAGTAA CTTGGATGTT 
GGAAATAGTT TTAAGACCCT AGCAGATAAA TTTCTCATGC ATACTTCCCT 
ACGGCCGAAT AGAGATGCAC CATCTACTAC AACAATTGGG TAGACAGATA 
GTTCTTGAAC AGTCTAAGGA GCCCGGGAAA CGTGAATTTA TAATTGAGCC 
AGAAGAGATT CGTGATGTAC TGACAAATGA AACAGGTACT GGATCAGTCA 
TTGGTATATC ATTTGATACA TCCAATATCG GAGAGGTTTC TGTAAGTAAG 
GATGCTTTTG AAGGAATGCG AAATCTCCGT TTCCTAAGAA TCTATAGGTT 
GTTAGGTGGT GAAGTTACTT TGCAAATACC AGAAGATATG GATTATATAC 
CTCGTCTTAG GTTACTATAT TGGGATCGCT ATCCAAGAAA AAGTCTTCCT 
CGGAGATTCA AGCCGGAACG TCTCGTGGAA CTCCATATGC CACGCAGCAA 
TCTCGAGCTG CTCTGGGGAG GAATCGAGCC CCTTCCTAAT CTCAAGATCA 
TAAATCTGAA CCGATCCTAT AGGTTGAAAG AAATCCCAAA TCTTTCGAAA 
GCCACTAATC TCGAGAGATT GACACTTGAG AGCTGCTTAA GTTTGGTGGA 
GCTTCCCTCT TCTATTTCTA ATCTACACAA ACTGGAGATT CTAGATGTTA 
AATTCTGCTC TATGCTACAA GTTATTCCCA CCAACATCAA CTTAGCATCT 
CTTGAGAGAC TCGACGTGAG TGGTTGCTCA CGATTGAGAA CTTTTCCAGA 
TATCTCCAGT AACATCAAGA CACTCATTTT CGGAAATATA AAGATAGAAG 
ATGTCCCTCC ATCAGTTGGA TGTTGGTCTC GTCTTGATCA ACTTCACATT 
AGCAGCCGAA GCCTCAAGAG ATTGATGCAT GTACCACCAT GTATAACTTT 
GCTATCTCTG AGAGGTAGTG GTATAGAGAG GATTACAGAT TGCGTCATAG 
GTCTCACTCG TCTACATTGG CTGAATGTCG ATAGCTGCAG AAAACTCAAG 
TCAATTCTGG GTCTCCCCTC CTCCCTCAAG GTCCTAGATG CAAATGATTG 
TGTATCACTC AAGAGAGTAC GCTTCTCTTT CCATAACCCA ATGCACACAC 
TCGATTTCAA CAACTGTTTG AAACTGGATG AAGAAGCAAA AAGAGGAATC 
ATACAACGAT CAGTGTCCAG GTACATATGC TTACCATGTA AAAAGATCCC 
TGAAGAGTTC ACTCACAAAG CAACAGGCAA ATCCATAACC ATCCCTCTGG 
CACCTGGTAC TCTCTCTGCT TCCTCAAGGT TTAAGGCTTC CATTCTCATT 
TTGCCAGTTG AGAGCTACGA AACTGAAGGT ATAAGTTGTA GTATAAGAAC 
CAAAGGAGGT GTTGAAGTTC ATTGCTGCGA GCTTCCATAT CACTTTTTGC 
GTGTTCGGTC AGAACACCTG TTTATATTTC ATGGTGACTT GTTTCCCCAA 
GGAAACAAAT ACCATGAAGT GGATGTGACT ATGAGCGAGA TTACATTTGA 
GTTCAGCCAC ACTAAAATCG GTGACAAGAT TATTGAGTGT GGTGTACAGA 
TCATGACAGA GGGAGCTGAG GGTGACAGTA GCAGGGAATT GGAAGTTTTG 
AAACTGAGAG TAGCAGCAGC CCAGTTGGGA GATTTGTTGG GAAATTTGAA 
TTTGGAGGCA ACAACAATCA CCACACAGAT GGAAATGGAG ATGGAAACTA 
TGAAGCAGAA GGTTCCAAGT TCTCTCAAGA TGAAAACATC AAAACCAGCA 
AACGTTGGTT TTATGAGTTG GCTTCGGAAG CTTGGTCAGT GAAGAAGATG 
AATTCTCATG GAGTCTCATG AAGACCAAAC CAGTTTTTGG CACTTTCTTA 
GCTCCTTAAT CATCTTCATA AGGTAGGAGA TTGGGAATTT CGACGCAGCA 
CCTGATTCTC CAGTGATCAA ATCTAAGTCC ACACAAAGAG ACCATATTGT 
CCAATCAGTT CCAGATACTT GGTGCATTGC CTTCTGTTGT GAGCATAAAA 
CGGCAAACCC TATGAAAGAA GGTTGATAGC ATTAGAGAAA ACAGAGCATT 
GCAGCTCACA CAGTCCACCC ATGAACTGAT GATTTTTCCG GATTGATTGC 
ATCTTAGAAT CATAATCCTG TTTCCATTGG CCTTAATTAG CTGTTTAAGT 
ACTAAGAAAA GTCTTGTTAC CTTGTGATCT AGTTAATTAG CTGTTTAAAT 
ACTAAGAAAA ATCTTGTTAC CTTGTGAATT ACTTACAAAA

Gene models with high sequence identity

  1. AT5G41740.1 [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily L domain-like 6.7e-38
superfamily Toll-Interleukin receptor 5.1e-30
superfamily P-loop containing nucleoside triphosphate hyd 2.2e-21
superfamily "Winged helix" DNA-binding domain 1.1e-08
superfamily Toll-Interleukin receptor 7.3e-07
FPrintScan Disease resistance protein 2e-17
FPrintScan Disease resistance protein 2e-17
FPrintScan Disease resistance protein 2e-17
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2.9e-07
HMMPanther WERNER HELICASE INTERACTING PROTEIN 0.00034
HMMPanther HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED 0.00034
Gene3D no description 1.6e-21
ProfileScan Toll-Interleukin receptor 19.832
HMMPfam Leucine-rich repeat 0.17
HMMPfam LRR_3 2.4e-05
HMMPfam Toll-Interleukin receptor 2.6e-25
HMMPfam NB-ARC 2e-38
HMMSmart Toll-Interleukin receptor 2.2e-13
HMMSmart ATPase, AAA+ type, core 0.0026

See the detailed result >

AT5G41740.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-J22 introduced

  • F20845 - Specific phenotypes were NOT observed.
  • F21648 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found