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  3. RAFL09-48-L24

RAFL09-48-L24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06403)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-L24 - full reading 
AAAAGACTAT CAAAAGAAGA AACAGAGCAA ATTTCATTCT CTCAGAACAA 
ATATATACAT ATTAATCAGA ATCAGGAAAA GTGAAGAAGC GAAAGAGAGA 
AGAAGATCGG ATGGGAGTGG ATTACTACAA AGTCCTCCAA GTCGATCGCA 
GCGCAAGCGA CGATGATCTC AAGAAAGCTT ATCGTAAACT TGCCATGAAA 
TGGCATCCCG ACAAAAATCC CAACAACAAA AAGGATGCCG AAGCTATGTT 
CAAACAAATA TCCGAAGCTT ACGAGGTACT AAGTGATCCT CAGAAGAAAG 
CTGTGTATGA TCAATATGGT GAGGAAGGTT TGAAAGGGAA CGTGCCACCT 
CCGGATGCAG GTGGAGCTAC TTACTTCTCT ACCGGGGATG GTCCAACGTC 
CTTCAGGTTC AACCCGAGAA ATGCGGATGA TATATTTGCT GAGTTCTTTG 
GCTTCTCTAG CCCATTTGGC GGCGGAAGAG GTGGTACAAG ATTCTCTAGC 
AGCATGTTTG GTGATAATAT GTTTGCTTCT TTCGGCGAAG GAGGAGGCGG 
TGGTGGTGGC TCGATGCATC ACGGTGGAGC TAGGAAGGCT GCTCCTATCG 
AAAACAAGTT GCCTTGTAGC CTTGAAGATC TTTACAAAGG AACCACCAAA 
AAGATGAGGA TTTCTAGGGA GATTGCTGAT GTCAGTGGCA AGACGATGCA 
GGTGGAAGAG ATTTTGACCA TTGATGTGAA ACCAGGATGG AAGAAAGGCA 
CAAAGATCAC GTTCCCAGAG AAAGGCAATG AGCAACCCGG TGTGATTCCA 
GCGGATTTAG TCTTCATAAT CGACGAGAAG CCTCACCCGG TTTTCACTCG 
AGAGGGTAAC GACCTCATAG TCACACAGAA GATCTCACTT GTTGAGGCCT 
TGACTGGTTA CACAGTGAAC CTGACTACTC TTGATGGTCG GAGACTGACA 
ATTCCAGTCA CCAACGTGGT CCATCCCGAG TACGAGGAAG TGGTACCGAA 
GGAAGGGATG CCATTGCAAA AAGACCAGAC TAAGAGAGGT AACTTGAGGA 
TCAAATTTAA CATCAAGTTC CCTACAAGGT TAACCTCAGA GCAGAAGACA 
GGAGTGAAGA AACTTCTCGG ATGAAATGAG TTATAGTCAG CACATTTCAG 
ACAAAACAAT GTTGAACAGA AGAGGAACAA GAAAATCATG TTGCAGACCA 
CAGGGATTGT GATTAAATAC TGTTGTGACC TTTTTGATCG ATTTGTAACA 
TATGTACGAT TGGATACCTC CTAATAAATT TGTTACTTTC TCTAC

Gene models with high sequence identity

  1. AT2G20560.1 [+] show detail - DNAJ heat shock family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Heat shock protein DnaJ, N-terminal 1e-27
Gene3D no description 1.6e-25
Gene3D no description 1.5e-25
ProfileScan Heat shock protein DnaJ, N-terminal 24.541
HMMPanther HSP40-RELATED 6.9e-189
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 6.9e-189
PatternScan Heat shock protein DnaJ, conserved site 0
HMMSmart Heat shock protein DnaJ, N-terminal 4.4e-33
superfamily Heat shock protein DnaJ, N-terminal 3.2e-33
superfamily HSP40/DnaJ peptide-binding 6.4e-22
superfamily HSP40/DnaJ peptide-binding 8.2e-17
HMMPfam Chaperone DnaJ, C-terminal 4.4e-30
HMMPfam Heat shock protein DnaJ, N-terminal 5.9e-28

See the detailed result >

AT2G20560.1

Model type
Protein coding
Short Description
DNAJ heat shock family protein
Computational Description
DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-L24 introduced

  • F04414 - Specific phenotypes were NOT observed.
  • F13426 - seed::increased length
  • F16622 - Specific phenotypes were NOT observed.
  • F19017 - Specific phenotypes were NOT observed.
  • F26817 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / sporophyte vegetative stage::decreased speed / stem::abnormal
  • F29242 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found