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RAFL09-48-N10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87837)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL09-48-N10 - 5 prime EST 
GTCCACGTCA CCTATTGTGT ATCTCATCAT CACCATGGAC AAGACATTTT 
TCTCTAGCAA CGAAGGGAAA CCAATTACAT GCAAAGCANC AATATGTAGA 
AAAGCAGGAG AAGCATTGGT GATTGAAGAC ATCCACGTGG ATCCACCCCA 
AGCTTATGAA GTTAGGATTA AGATTTTATG TACTTCTCTA TGTCACACTG 
ATCTTACTTT CTGGAAACTA AGCTTTGGAC CAATTTCAAG GTTTNCTAGG 
ATNCTTGGAC ACGA

Gene models with high sequence identity

  1. AT1G22430.2 [+] show detail - GroES-like zinc-binding dehydrogenase family protein
    E-value: 1e-138; Score: 98.83

3 prime EST [+] show sequence

Nucleotide sequence: RAFL09-48-N10 - 3 prime EST 
GTTTAAGAAA ATGTTAAGGG GTTTGGACTA CCAAATGATA AGTTTGTAGC 
TCGGGTGGAA AGAAAAAAAA TGGCAAGGTA ACAAGACAAA GCATCTTGAA 
AGACAAAGGA AGATAATCTA AAAAAGATCC ACGAGAAGAT TATAAAGTGC 
AAATATGAAC CTGGATAGTT ACTTATCCAT CATACAATGC AGCGGAGAGA 
CTTTACTTCC TCTAATAAAG CGAAAGCCTT ATTAATTGCT TTGAAATTCA 
GCTTCGTGTG TAATGAAACT ATCCAGATTG AGCTCCTTTT ATAGGTAATG 
ATCCACTAGA ATGGGAATAT CAAGTTGGGA TTTCAGACCA TCGAACAGGC 
TTCCGCAAAT AACTCTGCCC TCTTAAAAGA TTGAACCTAC CA

Gene models with high sequence identity

  1. AT1G22430.2 [+] show detail - GroES-like zinc-binding dehydrogenase family protein
    E-value: 4e-170; Score: 95.98

AT1G22430.2

Model type
Protein coding
Short Description
GroES-like zinc-binding dehydrogenase family protein
Computational Description
GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-N10 introduced

  • F02840 - Specific phenotypes were NOT observed.
  • F07625 - seed::decreased size / seed::decreased length
  • F10433 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found