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  3. RAFL09-48-O19

RAFL09-48-O19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08416)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-O19 - full reading 
AAGAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA 
AGTGGGGGAA AAAAGGCGAA GAATACGCAG ATTCCATCCA ATTTAGGGTT 
AGGACTTCCC CTAATTTGGA AACCTAGTCC TGTTTCCTGA TCTGTTTTCC 
GGATCGGACG AGAGACGAAT TAACGAAAAT GGGCGCGAAT TCTATTCCGA 
CGGACGCAAC CATTGATCTT GATGAGCAGA TCTCGCAGCT CATGCAGTGC 
AAGCCTCTCT CGGAGCAACA GGTTAGAGCA TTATGCGAGA AAGCCAAGGA 
GATCTTAATG GATGAAAGCA ATGTTCAGCC TGTGAAAAGC CCTGTGACAA 
TCTGCGGTGA TATTCATGGA CAGTTCCATG ATCTTGCAGA GCTTTTCCGT 
ATAGGGGGAA TGTGCCCTGA TACCAATTAC CTGTTTATGG GAGACTATGT 
GGACCGTGGT TATTATTCTG TTGAAACTGT TACGCTGTTA GTCGCCTTAA 
AGATGCGATA TCCTCAGCGA ATCACTATTC TTAGAGGAAA CCATGAAAGT 
CGTCAGATTA CTCAGGTTTA TGGATTTTAT GATGAATGTC TACGAAAGTA 
CGGCAACGCA AATGTTTGGA AAATCTTTAC AGACCTCTTC GACTATTTTC 
CTCTGACAGC CTTGGTTGAG TCAGAAATAT TTTGCCTTCA TGGTGGATTA 
TCTCCATCTA TCGAGACCCT TGACAACATA AGGAATTTTG ATCGAGTTCA 
AGAAGTGCCC CATGAAGGGC CGATGTGTGA CTTATTATGG TCTGACCCCG 
ATGACCGATG TGGTTGGGGC ATCTCTCCTC GGGGTGCCGG ATATACATTT 
GGTCAGGATA TATCTGAACA ATTCAATCAC ACAAACAACT TAAAGCTGAT 
CGCCCGAGCT CACCAGTTGG TTATGGATGG ATACAACTGG GCTCACGAGC 
AAAAAGTGGT TACTATTTTC AGTGCACCAA ACTATTGTTA CCGTTGTGGG 
AACATGGCCT CGATTCTTGA GGTCGACGAC TGCAGGAACC ACACCTTCAT 
CCAGTTTGAA CCAGCACCGA GGAGAGGAGA ACCAGACGTC ACCCGAAGGA 
CTCCAGACTA TTTCCTGTGA TCACTGGACA CAGACTCATC TCAATCAGCA 
GCTGCAGGCA CCCACAAGTG AAAAGTCACA GTTGGCTAAC TCTAGATTCT 
GGTCCTATGC ATTGTGTTCA GGTTGCTCTG TTTAAAATTC AACTTAGTGC 
CCACCACCGG AATATAGTGT GTATTATAGG CGAAGAAGGC TTCTTATCTT 
CCTCTATAAC CAAGAAAAGA AAAAAGATAC CCATTATGAA CATTGTTTTG 
TTGATGTTAT TAGCTTCTTC TTCTTCTCCC TTCTGCATCA GAATGTGGTT 
TCATGTGAGA AATCTTCTAA TTTTATTTCA CGTTATTCGT TCTTGAACAT 
CTCTGATTTT TGAATAGAAC CTTGAAATTG TTATGTTTAT TTGTTCTTCA 
AAGCTTGATA TAATAACAAT AGTCGCTGAA CGCATCAGAT CAGCCACTCA 
AAG

Gene models with high sequence identity

  1. AT2G42500.1 [+] show detail - protein phosphatase 2A-3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 1.1e-264
HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.1e-264
PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
superfamily Metallo-dependent phosphatases 1.5e-128
HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.3e-165
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
HMMPfam Metallophosphoesterase 9e-42
Gene3D no description 4.4e-127

See the detailed result >

AT2G42500.1

Model type
Protein coding
Short Description
protein phosphatase 2A-3
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1); Has 6823 Blast hits to 6634 proteins in 485 species: Archae - 80; Bacteria - 208; Metazoa - 2397; Fungi - 1409; Plants - 992; Viruses - 2; Other Eukaryotes - 1735 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-O19 introduced

  • F11934 - Specific phenotypes were NOT observed.
  • F24447 - rosette leaf::dark green / rosette leaf::increased size / stem::increased thickness / stem::increased thickness / stem::abnormal / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found