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RAFL09-48-P13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06409)

full reading [+] show sequence

Nucleotide sequence: RAFL09-48-P13 - full reading 
GTGCAAAAGA ACAGAATGAG TTCTAAGTTT GATATCGGCT CCTTAAGCAT 
AGTAATGACT CTGCTTATTT GCTTCTTATT ATTATCTTTG GCTCCAAAAC 
TTGAGGCTGA GCTCGCAACG GTCCAACATG CTCCAAACCC CGATGGCTCT 
ATCAGTTTTC TGGTGATTGG AGATTGGGGT AGGCATGGAC TCTACAACCA 
ATCCCAAGTT GCCCTCCAGA TGGGGAGAAT CGGGGAGGAG ATGGATATCA 
ATTTTGTGGT ATCGACGGGT GATAACATCT ACGATAACGG GATGAAAAGT 
ATCGATGATC CCGCCTTTCA ACTCTCCTTT AGTAATATCT ACACTTCTCC 
TAGCCTGCAA AAGCCTTGGT ACCTTGTATT GGGGAATCAC GACTATAGAG 
GAGATGTTGA GGCACAATTG AGTCCTATCC TCAGATCTAT GGATAGCCGT 
TGGATTTGCA TGAGATCCTT CATCGTTGAC GCTGAGATCG CAGAGCTCTT 
CTTTGTCGAC ACAACTCCTT TTGTAGATGC TTATTTCCTC AGTCCACAAG 
ACCAAACTTA CGACTGGAGC GGCGTATCAC CGCGAAAATC CTACCTTCAG 
ACCATCTTAA CGGAGTTGGA GATGGGTCTA AGAGAATCAA GTGCAAAATG 
GAAAATTGTG GTGGGTCACC ATGCTATAAA GAGTGCTTCC ATTCATGGGA 
ATACCAAAGA GCTTGAATCT CTCCTCTTAC CCATCCTTGA GGCGAATAAA 
GTTGATCTCT ATATGAACGG TCATGATCAT TGCTTGCAAC ATATAAGCAC 
ATCACAAAGC CCAATTCAGT TTCTAACGAG TGGTGGTGGG TCAAAGGCAT 
GGAGAGGCTA TTACAATTGG ACAACACCAG AGGATATGAA ATTTTTCTAC 
GATGGACAAG GTTTCATGTC AGTTAAGATC ACTAGATCAG AATTGAGTGT 
CGTTTTTTAT GATGTCTCCG GCAATAGTTT GCATAAGTGG GACACATCGA 
AAATGTTAGA CTCGGATTTT TATTTCCCAT TGTAATTCAC ATGAAAATCA 
GTTAAAGCAC ATAAATTCTA CATATAAATA AATATGATTA CTATGAGTGG 
TT

Gene models with high sequence identity

  1. AT1G25230.1 [+] show detail - Calcineurin-like metallo-phosphoesterase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PURPLE ACID PHOSPHATASE-RELATED 4.6e-219
HMMPanther TARTRATE-RESISTANT ACID PHOSPHATASE 4.6e-219
superfamily Metallo-dependent phosphatases 2e-57
Gene3D no description 7.9e-95
HMMPfam Metallophosphoesterase 4e-16

See the detailed result >

AT1G25230.1

Model type
Protein coding
Short Description
Calcineurin-like metallo-phosphoesterase superfamily protein
Computational Description
Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 3 (TAIR:AT1G14700.1); Has 1153 Blast hits to 1147 proteins in 286 species: Archae - 1; Bacteria - 297; Metazoa - 336; Fungi - 8; Plants - 186; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-48-P13 introduced

  • F06510 - seed::increased length
  • F06512 - Specific phenotypes were NOT observed.
  • F10506 - Specific phenotypes were NOT observed.
  • F12327 - Specific phenotypes were NOT observed.
  • F17405 - seed::increased size
  • F27115 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found