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  3. RAFL09-49-B03

RAFL09-49-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06411)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-B03 - full reading 
ACCTTTCGCT GTTTCCTCGT CAATTTCTTT GTTTGGTTGT TCTTTCTTCG 
CATCCAAAGA TGAAGCTCGT CAGGTTTTTG ATGAAGTTAA ACAATGAAAC 
TGTGTCTATC GAGCTGAAGA ATGGGACTGT GGTCCATGGA ACCATCACTG 
GTGTTGATGT GAGCATGAAC ACTCACTTGA AGACAGTGAA GATGAGCCTG 
AAGGGGAAAA ACCCAGTAAC ACTTGATCAT CTTAGCTTGA GGGGTAATAA 
TATTCGCTAC TACATTCTTC CTGATAGCTT GAACCTCGAG ACTTTACTTG 
TGGAAGACAC TCCTAGAGTT AAACCTAAGA AGCCTGTTGC TGGGAAAGCT 
GTTGGACGCG GTCGCGGACG TGGCCGTGGG CGTGGTCGCG GCAGAGGTCG 
TTAGATGTAG CAGCGCTCTG GAACATGTTG AAGGTTTGTG AGTTTAATTT 
TTAGGAGAAT GTACGAGTTA TGTAACTAGC AACTCTGGCA AAGGAAAGAT 
TTGATTGAGA AATAGTATGA TTGATGCTCT AGTAAGGAGT TACTTTGTAA 
TGGAATTCCA TGGATAACAA GATTTGGCTT TACATGTTAT AAGAGCATCT 
ACAAGG

Gene models with high sequence identity

  1. AT3G07590.1 [+] show detail - Small nuclear ribonucleoprotein family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.2e-24
superfamily Like-Sm ribonucleoprotein (LSM)-related domain 2.5e-23
HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 1.3e-16
HMMPfam Like-Sm ribonucleoprotein (LSM) domain 3.2e-16
HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1.1e-67
HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1.1e-67

See the detailed result >

AT3G07590.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1); Has 1173 Blast hits to 1172 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 423; Fungi - 342; Plants - 215; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-B03 introduced

  • F13831 - Specific phenotypes were NOT observed.
  • F21236 - Specific phenotypes were NOT observed.
  • F22133 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found