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  3. RAFL09-49-C16

RAFL09-49-C16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17756)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-C16 - full reading 
GATCCCACAT CTCTACTCAT CCACATTAGT CAAAGATCTC TATTGGTACT 
TCTCAAATGG ATCACAAAAT CCTACTAACA CCTCCCAAAT CTTTATACAC 
CAAATGTATC ATAACCATCA TTTACGTCGT ATCAATATCT CATCTAAATG 
CCCATTTCAT AACTTCATGC AAACAAACCC CATACCCTAG CGTCTGCGAC 
CACCACATGT CTAATTCACC TCTCAAAACT TTAGACGACC AAACGGATGG 
GTTCACTTTC CACGACCTTG TGGTCAGCTC CACCATGGAC CAGGCCGTGC 
AACTACACCG CCTTGTCTCT TCCTTGAAAC AGCATCATTC TCTCCACAAA 
CACGCAACAT CAGCTTTGTT TGACTGCTTG GAGCTCTACG AAGACACTAT 
AGACCAACTC AACCACTCTC GGAGATCGTA CGGTCAATAT TCTTCGCCAC 
ATGATAGACA AACCTCGTTA AGCGCGGCCA TAGCTAATCA AGACACTTGC 
AGAAACGGAT TTAGAGATTT TAAGTTAACC TCTTCGTATT CAAAGTATTT 
CCCGGTACAA TTTCACAGGA ATCTCACTAA GTCTATTAGC AACTCTTTGG 
CAGTTACTAA GGCTGCTGCT GAGGCTGAGG CGGTTGCCGA GAAATATCCA 
TCGACGGGGT TCACTAAATT CAGCAAACAA AGAAGTAGTG CCGGAGGTGG 
TAGCCACCGG AGATTATTGT TGTTTTCCGA CGAGAAATTT CCATCGTGGT 
TCCCTCTTTC CGACCGTAAA CTACTGGAAG ATTCCAAAAC TACGGCAAAA 
GCCGATCTTG TGGTGGCTAA GGACGGTTCG GGTCACTACA CAAGCATTCA 
ACAAGCGGTA AACGCAGCTG CCAAACTTCC TCGGAGAAAC CAGAGACTTG 
TGATATACGT TAAAGCCGGC GTTTACAGAG AAAACGTGGT AATCAAGAAA 
TCGATCAAGA ACGTGATGGT TATCGGAGAT GGCATCGATT CTACCATCGT 
CACCGGTAAT AGGAACGTTC AAGATGGCAC GACGACGTTT AGGTCCGCAA 
CTTTTGCTGT TTCCGGCAAC GGTTTTATCG CACAAGGCAT AACATTCGAG 
AACACGGCAG GACCGGAGAA ACATCAGGCG GTGGCTCTCC GATCAAGTTC 
AGACTTCTCC GTCTTCTACG CCTGCTCTTT CAAAGGCTAT CAAGACACTC 
TCTACCTTCA TTCTAGTCGT CAGTTCTTGA GAAACTGCAA TATTTACGGA 
ACCGTCGATT TCATCTTCGG AGACGCAACC GCCATCCTCC AAAACTGTAA 
CATCTACGCT CGTAAGCCGA TGAGCGGCCA GAAAAACACG ATCACCGCTC 
AATCACGCAA AGAACCCGAC GAGACTACTG GCTTCGTCAT CCAGAGCTCG 
ACGGTGGCTA CTGCGTCGGA AACTTATTTA GGACGGCCGT GGAGATCGCA 
TTCGAGGACG GTTTTCATGA AATGTAATCT TGGAGCGTTG GTGAGTCCGG 
CGGGATGGTT GCCTTGGAGT GGTAGTTTTG CTCTTAGCAC TCTTTATTAC 
GGTGAGTATG GTAATACCGG CGCCGGAGCA AGTGTCTCCG GTAGAGTTAA 
GTGGCCAGGT TATCATGTTA TAAAGACGGT GACAGAGGCG GAAAAATTCA 
CGGTGGAGAA TTTCTTGGAC GGAAACTATT GGATTACGGC TACGGGAGTA 
CCGGTCAACG ATGGACTTTG ATTTTTTTCT TAAAAGAATT AATTTTGTTA 
GTGTGGTCTT TGTTGATTTT ATGTTTTTTT TGTTTGTTGG CGTATAATTG 
TTATATATAG CTTTATTTCC CAAATCCCAT GTAACAGATG GATTGTCTTG 
AATCTATATA GTATCTATAA TACCAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G23200.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMTigr Pectinesterase inhibitor 0.00000000028
HMMPfam Pectinesterase, catalytic 6.7e-133
HMMPfam Pectinesterase inhibitor 2e-29
Gene3D Pectinesterase inhibitor 0.00000037
Gene3D Pectin lyase fold 8.8e-122
HMMSmart Pectinesterase inhibitor 7.5e-33
superfamily Pectin lyase fold/virulence factor 1.3e-115
superfamily Pectinesterase inhibitor 5.8e-16
PatternScan Pectinesterase, active site 0

See the detailed result >

AT1G23200.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 3098 Blast hits to 3048 proteins in 474 species: Archae - 14; Bacteria - 863; Metazoa - 1; Fungi - 203; Plants - 1990; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-C16 introduced

  • F05013 - Specific phenotypes were NOT observed.
  • F14407 - Specific phenotypes were NOT observed.
  • F15634 - Specific phenotypes were NOT observed.
  • F23226 - Specific phenotypes were NOT observed.
  • F24901 - Specific phenotypes were NOT observed.
  • F30328 - rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / cauline leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

8 mutant lines found