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  3. RAFL09-49-C23

RAFL09-49-C23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09839)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-C23 - full reading 
AAATAGTTTG ATTTCTGTTG TTGAGTTTAT GCGATATCCC AACTGGTGAA 
ACTGTGTTTA TTGGTTCAGA CAGAGATAAA TGGCTTCAAA GATTATTGCT 
GGCAAGCCGG ATGATACCGA GTATGAAATC ATTGAAGGTG AGTCTGAGAG 
CGCTTTAGCA GCGGGGACAA GCCCTTGGAT GAATTCATCA ACGTTGAAGC 
TTCGACATCG AATTGGAAGA GGTCCCTTCG GTGATGTTTG GCTGGCTACT 
CATCATCAGT CAACTGAGGA CTATGATGAG CATCATGAAG TGGCCATCAA 
AATGCTTTAT CCCATCAAGG AAGATCAAAG AAGGGTTGTG GTAGATAAGT 
TTGAAGATCT CTTCTCTAAA TGTCAAGGAC TAGAGAATGT CTGTCTGCTC 
AGGGGAGTCT CTAGTATCAA TGGAAAGATA TGTGTCGTCA TGAAATTCTA 
CGAGGGCTCT CTTGGTGACA AGATGGCTCG GCTTAAAGGA GGAAAGCTTT 
CACTGCCAGA TGTTTTGAGA TACGGGGTTG ATCTGGCTAC AGGGATCCTG 
GAGTTGCACT CAAAAGGGTT TCTCATTCTC AATCTCAAGC CCTCTAACTT 
TCTTCTCAGT GATAACGACA AGGCCATCCT CGGGGATGTT GGGATCCCTT 
ATCTCCTTCT TAGTATCCCT TTACCAAGTT CTGATATGAC AGAGAGACTT 
GGAACTCCAA ACTATATGGC ACCAGAACAG TGGCAACCGG ATGTCAGAGG 
TCCCATGTCC TTTGAGACTG ATTCTTGGGG ATTTGGTTGC AGCATTGTTG 
AAATGCTGAC TGGTGTACAA CCTTGGTCTG GGAGATCTGC CGATGAAATA 
TATGATTTGG TGGTGAGAAA GCAAGAAAAG CTTAGTATCC CCAGTAGCAT 
ACCGCCTCCT CTCGAGAACC TACTTCGGGG TTGCTTTATG TATGATCTTC 
GAAGCCGACC TTCGATGACT GACATCTTAC TCGTCTTAAA GAGCTTGCAG 
AACTCGGAGG AGGAACAGGT CAGGAGAGGC ATTGATAGTA GAGAAATCAG 
GAAGAGCTCG GCTACTCTTG GTTATACAGA ATGGTTTCTT TCAAAGGATC 
ATCTGCAAGT GCGCGACACC GTGCGTTCAA GAAAGCCTGC CAATTCGTGT 
AAGCATGAGA ACATGGATGT GCCAGAAGGA ATGGTGGTTG GTTTAGAACG 
TGACTCCACA GACCCAGATG GATTTGTGCT AGTTAAAGTC CATGGTGTAC 
ATGATCCATT AAGGGTTCAC GTATCTGTTC TTGAACGGGT AACTAACGGC 
TTAGCTTCTG GAGATTGGGT GCGTCTGAAG GTCAGGAAAG ACAAGAGGCA 
CTCTCCGGTT GGTGTTCTCC ATTCAATTGA CCGTGAGGGA AATGTAGCTG 
TTGGATTTAT TGGGTTGCCA ACTCTCTGGA AAGGGACATC ATCGCAGCTT 
CAGATGGCTA AAGTATACAG TGTGGGTCAA TTTGTGAAAC TCAAAGCCAA 
TGTTGTCATC CCGAGATTCA AATGGATGCG TAAAGGTAGA GGTATTTGGG 
CAACTGGCAG GATCTCTCAG GTTCTACCAA ACGGTTGCCT TGAAGTGGAC 
TTCCCTGGAA TGTTACCTTT TGGAGAGGAA CATGGAAGCT ATCTTGCAGA 
TCCGGCTGAA GTAGAGATTG TGAATTTCAA TACATGTCAA GGAGCTGTGG 
AAAAATATCA ACATCTGGAG GATTTTCATT GGGCTGTGAG ACCTTTGCTT 
ATTGCTATGG GTCTATTGAC AGCGATGAAG TTAGGGATCT GTGTCAGGAA 
GAAAATAGGA AGGTCAAAGG ATGGGAAACA ACGCGATGGC TCGACTGGAC 
AAGGTGACTG TAAGATTCCG GATGGTAAGG GCTCTGACAA ATCTAAATGG 
CTTGTGTTCT TTTAGGTCTG CTATGAGACA CAGACCTTGT CTGGTCCATA 
TATTATACTG TTCTAGTCAT AATAACGTTT CATGTACATA ATGACGTTTT 
TCTTTTTTGC TCTTTAAAAT TACCAAAAAG CTTTCACGC

Gene models with high sequence identity

  1. AT4G32250.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR22967:SF2 0
Gene3D G3DSA:3.30.200.20 2.19999900980707e-07
Gene3D G3DSA:1.10.510.10 1.2000011745814e-31
superfamily Protein kinase-like domain 4.7e-53
HMMPanther PTHR22967 0
HMMPfam Serine-threonine/tyrosine-protein kinase 1.99999999999999e-30
ProfileScan Protein kinase, catalytic domain 0

See the detailed result >

AT4G32250.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinases;ubiquitin-protein ligases (TAIR:AT5G13530.2); Has 69788 Blast hits to 69453 proteins in 3396 species: Archae - 89; Bacteria - 9621; Metazoa - 27939; Fungi - 6217; Plants - 15112; Viruses - 181; Other Eukaryotes - 10629 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-C23 introduced

  • F12141 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found