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  3. RAFL09-49-F17

RAFL09-49-F17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08425)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-F17 - full reading 
AATTCAAACG GGAGATTTCG TTTTCCGATC ATCACCGATC AACTTCTTCG 
CCGGAGAACA AATAAGTTTC AAAGCTTCTT TTGACGATTA AAGTAGAATA 
AACAGAAATT GAATCCATGA AGAAGATAAA GAGAAACCTC AGAGAAGAAG 
AAGAAGGAAG GTGATGAATG TTGAGATCGA TTTTTGATTT CAATCAACGT 
TCAACGAAGA TGGTGATGAT TTCTCATAAG TTGGATTTGA TTTTGGTTTT 
CATAATCGTA ATCGGAGGAT CTATTTTCCG ACGAGTTTCT GCTAATTTCA 
CCGTACCTTG TAACGGAAGA TGCGGTGGAT TGACTCTGCC TTATCCTTTC 
GGGTTTTCAA ACGGTTGTTC GATCCGATTC GATTGCTCTG CGGCGGAGAA 
ACCGATGATC GGAGACTTTT CCGTTCAAAA CGCGACGGAA AACAGTATAT 
TTGTCGGTCT CTCTCACAAT TGTACTCGGA AGATTGAAGA TATGAATCCG 
CTTTTCGGCG AGAATTTCGC ACCAACGTCG GAGAACAGTT TCTTGATGGA 
GAATTGTAAC CGTACCACCG ATGGTTGCTC TATCAAGCAG AAGTTTCTGG 
AGAATGTGCT GAAACTCAAA AGTTGTGATG CTACTGGAAA CATAAGTTGT 
TTTTCTTTAG ATAGTAATTC GAGTTCGAAG AACTCAGCTA AGTTTTTCAG 
TATGAAGACA TTAAGGAACA GCTCGTGTAG TTTGTTGTTC TCGTCGATAG 
CTTTCGAGTC TGTAGGTGTG AATGCGGGTA TAGCGTTAGA GTTTGAGCGA 
GTTCGGTTAG GTTGGTGGCT TAAGGGAGGT TGCGAGAGCG GAACTTGCGC 
GGCTAACACC GATTGTACAG ACGTTGAAAC TCCTCATGGA TATGCAGGAC 
ACCGGTGCTC ATGTCTTGAC GGTTTCCACG GTGACGGATA CACCAACCCT 
TGCCAGAGAG CACTACCGGA GTGCCGTGGT TCCAAGCTCG TCTGGAGACA 
TTGTAGATCT AATCTTATTA CTATTGTAGG AGGAACTGTT GGTGGAGCGT 
TTTTACTAGC TGCCTTGGCT TTTTTCTTCT TTTGTAAGCG GAGACGGTCT 
ACTCCTTTGA GAAGTCATTT AAGCGCAAAG CGTCTTTTGT CTGAAGCTGC 
AGGGAACTCG AGTGTCGCCT TTTTCCCTTA CAAGGAAATC GAGAAAGCGA 
CAGATGGTTT CTCTGAAAAG CAGAAGTTAG GAATAGGTGC ATATGGTACG 
GTCTATAGAG GAAAGCTCCA AAATGATGAA TGGGTTGCTA TCAAAAGACT 
TAGACATAGA GATTCAGAAA GTCTTGACCA AGTCATGAAT GAGATCAAGC 
TTCTTTCCTC TGTGAGTCAC CCGAATCTTG TCCGTCTCTT AGGATGTTGT 
ATAGAACAAG GCGATCCAGT TCTCGTTTAT GAGTACATGC CGAATGGAAC 
TCTATCTGAA CATCTACAAA GAGATAGAGG GAGTGGTCTT CCATGGACCT 
TGCGTCTCAC TGTTGCTACT CAAACAGCTA AAGCAATCGC GTATCTCCAC 
TCTTCAATGA ACCCACCGAT CTATCACCGT GACATCAAAT CTACCAATAT 
CCTTCTTGAT TATGATTTCA ACTCCAAAGT TGCGGATTTC GGACTCTCTA 
GACTGGGAAT GACGGAATCT TCTCACATAT CAACGGCTCC TCAAGGGACT 
CCTGGTTATC TTGACCCGCA GTACCATCAA TGCTTTCATC TCTCTGATAA 
GAGCGACGTC TACAGCTTTG GAGTCGTCCT TGCCGAGATT ATAACGGGAT 
TGAAAGTCGT TGATTTCACA CGTCCACATA CCGAAATCAA CCTAGCGGCT 
CTTGCTGTTG ACAAAATCGG GTCAGGTTGT ATCGATGAGA TAATAGACCC 
GATTCTTGAC TTGGATCTCG ACGCATGGAC TCTCTCATCC ATACACACGG 
TGGCTGAGCT TGCATTTCGA TGCTTAGCCT TCCACAGTGA CATGAGACCG 
ACAATGACCG AAGTAGCGGA CGAGCTTGAA CAGATAAGAC TCAGTGGTTG 
GATTCCAAGC ATGAGCTTGG ATTCACCAGC CGGTTCTCTC CGTTCATCTG 
ATCGAGGAAG CGAAAGATCA GTTAAACAAT CATCAATAGG AAGCAGAAGA 
GTCGTTATCC CTCAGAAACA ACCTGATTGC CTCGCATCCG TCGAAGAGAT 
TAGCGATAGC TCACCCATCT CAGTTCAAGA TCCTTGGTTA AGTGCACAAA 
GCTCACCGTC TACAAATACA TTGCTCGGTA ACATTCCAAG ATGATAGTAT 
GATCTCAAAA CACGATTACC ACTTTCTTGT TTATATAAGT CCCTCTTTTG 
TGTAGCTTTC ACAATCATTC AGTGTTTATA ATGCTAAGTA GAGAGATTAA 
CAATGGTGAA AACAGGTTTA TACATGAGTT ATAATGTAAA CGATCTTGAA 
ACAAGATCTT TCAACC

Gene models with high sequence identity

  1. AT2G23450.2 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 7.8e-78
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMSmart Serine/threonine-protein kinase domain 1.6e-39
HMMSmart Tyrosine-protein kinase, catalytic domain 3.7e-25
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3e-157
ProfileScan Protein kinase, catalytic domain 37.333
Gene3D no description 1.4e-23
Gene3D no description 1.9e-46
HMMPfam Serine/threonine-protein kinase-like domain 5.4e-48

See the detailed result >

AT2G23450.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like (InterPro:IPR006210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G66790.1); Has 113981 Blast hits to 112485 proteins in 3193 species: Archae - 103; Bacteria - 12981; Metazoa - 41291; Fungi - 9532; Plants - 32683; Viruses - 360; Other Eukaryotes - 17031 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-F17 introduced

  • F09828 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found