1. Home
  2. Full-length cDNAs
  3. RAFL09-49-I18

RAFL09-49-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06419)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-I18 - full reading 
GGTAAATTTC TGCTCTAACT TTTTTTTTTT CATCATCTTT TTGGTTTCGC 
CAATAATGGA ACTCTTCTTC CACCATTTTC CTGGAAAATC TCGGTATCGA 
GAAGATGAAT CCCTAGACAG ATAAATCTAG AATCACTCAA ATCTCTGCTC 
TTCTTCCGAT TCAGATCGTA TCGAATTTTG AATTTTGTAT CTCGCTACAC 
TGTTCGATTG AGAATTCTTT TTTTCCGATT GATTCGAATC GGATTTTGTT 
TTTTTCCTCG ATATAGAATG ACTTCGAATC AACGTATGTT GTTCTACTCC 
TGCATTGCGA AAGGAACAGT GATTCTCGCA GAATTCGCTT CAAAGGAAGA 
GCCAGGAATC GAAGATCTAG CTTTGAGATG CATTGAGAAC GTACCTCCAC 
ATCATTCGAT GATCTCTCAC ACAGTCCATA AGAGAACCTA CGCTTTGATC 
ATCGATGGAT TGTTTTCGTA TTTCGCGATT TTAGATGAGG TCGTAGCGAA 
ATCGGAGTCT GTATGGCTAT TCAATCGATT GAAATCAGCT ACAGAGTCTC 
TAATGGAAGA CGGATCTACT GCGGATTCGT TGGATAATCC GACTCAACAC 
TGTCTCCAAT CAAAGCTAGA TCCAGTTTTC GCTGAGATTG CTGCTATTGG 
TGGTAATCAT AATAAGGATT TGGAATTGGA GTTTGGATCA CCGAGGAGTA 
TAGCGAGGGA GATTAAGAGT AATAATCAGA GTTTGGATTC GTCCAAGGGA 
CGAAAAGGCG GTGCGTTGAT GCCGCTTTTA GGAAAGCCGT TGAGGGTGTT 
GAAGAACAAG AAGAGATTGC AGACGGAAGC GAAAAGTGAA GGTCATTGGA 
ATGAGAAGAA GATGGACCTA GGAGGAGGAG GTAAAGGAGT GAGGAATGGT 
TTGATTCATG ATCATCATCA TAGACAAAAG GCAAAACAGA TATGGAGGAA 
ACATGTTTGG ATTGTTTTGA TGTTTGATCT CTGTATCTGC CTTGTTCTCT 
TTGGAATCTG GCTTTGGATT TGTCAAGGGT TTCAATGCAT CGATGGGTAA 
TTATCTTCGA TCATCTAAGT TATGTGTGGT TGAATGTTTA AAAAAAATAT 
CCGAGGTGTT GTTTCCAGGG TTTAAAAAGA AAGCCTGGTT TACACGTTTG 
TGATGATGTT TTTGTTTGTG TTTTTTTGAA GTTGTTCTTC ATGAGGTAAA 
AAGAAAAAAA AGTGTTTGTA AAAATCTCTT TTGTAATGAT ATCTCTTCGT 
TTTCTTTGGA TGTTTTGATT AC

Gene models with high sequence identity

  1. AT4G27840.1 [+] show detail - SNARE-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G27840.1

Model type
Protein coding
Short Description
SNARE-like superfamily protein
Computational Description
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52990.1); Has 279 Blast hits to 279 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-I18 introduced

  • F25844 - Specific phenotypes were NOT observed.
  • F27217 - Specific phenotypes were NOT observed.
  • F29709 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found