1. Home
  2. Full-length cDNAs
  3. RAFL09-49-J01

RAFL09-49-J01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09841)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-J01 - full reading 
AAAAAACACG GCTCTCTCTT CTTCATCATC ATCATCATCT TCCTCTCGAT 
CGGAAAATAG TCAAAAGTTT CTATAAATTG TTGAATCAAA GCAGAGAAGA 
AGAAGAAGAC GATCATGAAT CCAGATTCCG ATTATCCTCA TCTCCCTAAC 
ATCAAGATCC ACCATCCTTC ATCTCCTCGT CACTCTCACC ACCACTCTTC 
CTCCACTCCT TCCGCCGCTA CTCCTACCCC AACCGCCGGT GCTCGCCGTA 
AGATCGGAGT CGCCGTTGAC CTTTCCGAAG AAAGCGCTTT CGCTGTTCGC 
TGGGCTGTCG ATCATTACAT CCGTCCCGGA GACGCCGTCG TCATTCTCCA 
CGTTTCTCCA ACCTCCGTTC TCTTCGGCGC CGATTGGGGA CCTCTCCCTC 
TCCAAACTCC TCCTCCTCCT TCCGCCGCTA CCGATCCCGG AGCTCAGCCG 
AAGCCTAGTC AGGAAGATTT CGATGCGTTT ACTTCTTCCA AAGTAGCGGA 
TCTAGCGAAG CCGTTGAAGG AAGCTGGGTT TCCTCATAAG ATCCATATAG 
TGAAAGATCA CGATATGAGA GAGAGGCTTT GCTTAGAGAC TGAAAGGCTT 
AATCTAAGCG CCGTGATAAT GGGAAGCAGA GGATTTGGTG CTGAGAAGAG 
AGGAAGTGAT GGCAAGCTTG GCTCTGTTAG TGATTATTGT GTTCACCATT 
GTGTTTGTCC TGTTGTTGTT GTTAGATATC CTGATGATCG TGATGGTCCT 
GCTCCTCCTG GGAATGTTGG AGCTACCAGG GAAGCTATTG TCACTGTTAA 
ATCACGTAGG GATGATGACG ATGATGATGA TGAAGATCAT GAGGCTAAGA 
TTGCTGCTGC TGCTTCCGAT CATCATGAAC ACATCAAAGA TGAGTAAAGT 
GCCTTAGTAT CTCATCAGGT TCACCCTCTT CACAGTCAGG TACAACGATG 
GATGAAACAA AACGGATTTG TGCAGAGGAG TGTGTTTGTG TGTTTGTTTA 
TTGCTATCTT TTGCAATATT GAAAAGTCTC TGGAATCTCC TCTGGATTAT 
TTATTCCCAG TCCTTGTTCT TCTTATAATT CTCCATGTAT GATTTTCACA 
TTTAAACAAT GCCCTTTTCC ATGTATGACT TTCACATTTA AACAATACCC 
TTTTGGGGTT ATGACCTTAA TCTTCAATCT AATTTGATAT CCGATGAGAT 
ACT

Gene models with high sequence identity

  1. AT4G27320.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Adenine nucleotide alpha hydrolases-like 3.1e-24
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.7e-22
FPrintScan Universal stress protein A 1.4e-06
FPrintScan Universal stress protein A 1.4e-06
HMMPfam UspA 3.5e-28

See the detailed result >

AT4G27320.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Curator Summary
Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.
Computational Description
PHOS34; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G54430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-J01 introduced

  • F00737 - Specific phenotypes were NOT observed.
  • F22016 - rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::abnormal / stem::abnormal
  • F23814 - Specific phenotypes were NOT observed.
  • F26108 - Specific phenotypes were NOT observed.
  • F26326 - seed::decreased width
  • F26527 - seed::increased size / seed::increased length
  • F29333 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found