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  3. RAFL09-49-K04

RAFL09-49-K04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17757)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-K04 - full reading 
GGTGTGTTCG CCTTTCTCTC GTACAAGTCA AAATGGCGTC CGTTGTTCTT 
CGAAACCCTA GCTCGAAGCG CCTTGTTCCA TTCTCTTCCC AGATCTACTC 
TCGCTGTGGT GCTTCCGTTA CTTCCTCTTA CTCGATCTCT CATTCTATCG 
GTGGAGATGA TCTCTCTTCC TCTACCTTCG GAACCTCCTC CTTCTGGAGA 
TCCATGGCCA CTTTTACTCG AAATAAACCT CATGTAAATG TTGGAACTAT 
TGGGCATGTT GATCATGGCA AGACCACTTT AACTGCTGCA ATCACAAAGG 
TTCTTGCTGA GGAGGGCAAA GCTAAAGCTA TTGCCTTTGA TGAAATTGAT 
AAAGCTCCTG AAGAGAAGAA GAGAGGAATT ACTATTGCCA CGGCTCATGT 
GGAGTATGAA ACTGCAAAGC GTCACTATGC TCATGTGGAT TGCCCTGGAC 
ACGCAGATTA TGTTAAAAAT ATGATTACTG GAGCTGCGCA AATGGATGGC 
GGAATTCTTG TGGTTTCAGG ACCAGATGGA CCCATGCCGC AGACAAAGGA 
ACATATTCTA CTTGCACGCC AGGTTGGTGT TCCCTCACTT GTGTGCTTCT 
TGAACAAAGT TGATGTGGTG GATGACCCTG AGCTCTTGGA GCTTGTCGAG 
ATGGAACTAC GTGAGCTCCT CAGCTTCTAC AAGTTTCCTG GGGATGATAT 
TCCCATCATC CGAGGATCTG CTCTGTCCGC ATTACAGGGC ACCAATGATG 
AAATTGGAAG GCAAGCTATA TTAAAGCTGA TGGATGCTGT TGATGAATAT 
ATACCTGACC CTGTTCGCGT CCTTGACAAG CCTTTCTTGA TGCCAATTGA 
AGATGTTTTC TCAATTCAAG GACGTGGAAC TGTTGCAACC GGTCGTATCG 
AACAGGGAGT CATTAAAGTG GGTGAAGAAG TTGAGATATT GGGTTTACGT 
GAGGGGGGTG TTCCACTGAA ATCGACTGTA ACTGGGGTTG AGATGTTCAA 
GAAGATTTTG GATAATGGAC AGGCTGGTGA TAATGTAGGA CTTCTTCTGC 
GTGGGCTAAA GAGAGAAGAC ATTCAGCGTG GAATGGTGAT TGCTAAGCCT 
GGTTCATGCA AGACATACAA GAAGTTTGAA GCAGAGATTT ACGTGCTCAC 
AAAGGATGAA GGTGGACGTC ACACTGCATT TTTCTCTAAC TACAGGCCTC 
AGTTTTACTT GAGGACTGCA GATATCACTG GCAAAGTGGA ATTACCCGAA 
AACGTGAAGA TGGTTATGCC TGGTGACAAT GTCACAGCTG TTTTCGAGTT 
AATCATGCCT GTCCCACTCG AAACAGGTCA AAGATTTGCC TTAAGGGAAG 
GAGGTAGAAC AGTTGGAGCT GGTGTTGTAT CAAAAGTGAT GACCTAAACT 
ACTCAAAAGC ACATTCTTCT CCTTCGTTCT CTAGGAATCC ATCAATTTCG 
AGATTTTTCT TTTTGTCTTT TTGCTGCTTT GAGATTTCTT TGGGTAGATC 
AAATAAACAG AGAGAAACTT AATTTATGTT TCCAATGAGA AAGATTAGGG 
CAGAGGGCAC GAAACGTCTA TTTCTTTTTG ATGCTTCCTA CTTTGTGAAA 
CTTTCAAAAA GCCACTTCCA ATTCTTTCTC ACCTTCGTGG TTTGTCAAGT 
ATTTGTTTTT ATTTCTTTAA ACCAAAATCA TGAATTTTCG ATTATTAAAT 
TAAGTTGACC AGAAATGAAA TATTTATTTC ATGTTTAGCG AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G02930.1 [+] show detail - GTP binding Elongation factor Tu family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Translation elongation factor EFTu/EF1A, bacterial/organelle 1.1e-270
HMMTigr Small GTP-binding protein 0.000000004
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
PatternScan Protein synthesis factor, GTP-binding 0
HMMPfam Protein synthesis factor, GTP-binding 2e-60
HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 9.6e-36
HMMPfam Translation elongation factor EFTu/EF1A, domain 2 6e-17
Gene3D no description 7.1e-57
Gene3D no description 1.9e-46
Gene3D no description 5.6e-18
superfamily P-loop containing nucleoside triphosphate hyd 1.5e-63
superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 1.5e-37
superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 1.5e-33
HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 4.7e-234
HMMPanther TRANSLATION FACTOR 4.7e-234

See the detailed result >

AT4G02930.1

Model type
Protein coding
Short Description
GTP binding Elongation factor Tu family protein
Computational Description
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-K04 introduced

  • F08621 - Specific phenotypes were NOT observed.
  • F26716 - rosette leaf::abnormal / stem::abnormal / cauline leaf::dark green / cauline leaf::abnormal / whole plant::decreased height / stem internode::decreased length / rosette leaf::dark green / rosette leaf::decreased size / cauline leaf::decreased width / cauline leaf::abnormal / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found