1. Home
  2. Full-length cDNAs
  3. RAFL09-49-K04

RAFL09-49-K04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17757)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-K04 - full reading
GGTGTGTTCG CCTTTCTCTC GTACAAGTCA AAATGGCGTC CGTTGTTCTT 
CGAAACCCTA GCTCGAAGCG CCTTGTTCCA TTCTCTTCCC AGATCTACTC
TCGCTGTGGT GCTTCCGTTA CTTCCTCTTA CTCGATCTCT CATTCTATCG
GTGGAGATGA TCTCTCTTCC TCTACCTTCG GAACCTCCTC CTTCTGGAGA
TCCATGGCCA CTTTTACTCG AAATAAACCT CATGTAAATG TTGGAACTAT
TGGGCATGTT GATCATGGCA AGACCACTTT AACTGCTGCA ATCACAAAGG
TTCTTGCTGA GGAGGGCAAA GCTAAAGCTA TTGCCTTTGA TGAAATTGAT
AAAGCTCCTG AAGAGAAGAA GAGAGGAATT ACTATTGCCA CGGCTCATGT
GGAGTATGAA ACTGCAAAGC GTCACTATGC TCATGTGGAT TGCCCTGGAC
ACGCAGATTA TGTTAAAAAT ATGATTACTG GAGCTGCGCA AATGGATGGC
GGAATTCTTG TGGTTTCAGG ACCAGATGGA CCCATGCCGC AGACAAAGGA
ACATATTCTA CTTGCACGCC AGGTTGGTGT TCCCTCACTT GTGTGCTTCT
TGAACAAAGT TGATGTGGTG GATGACCCTG AGCTCTTGGA GCTTGTCGAG
ATGGAACTAC GTGAGCTCCT CAGCTTCTAC AAGTTTCCTG GGGATGATAT
TCCCATCATC CGAGGATCTG CTCTGTCCGC ATTACAGGGC ACCAATGATG
AAATTGGAAG GCAAGCTATA TTAAAGCTGA TGGATGCTGT TGATGAATAT
ATACCTGACC CTGTTCGCGT CCTTGACAAG CCTTTCTTGA TGCCAATTGA
AGATGTTTTC TCAATTCAAG GACGTGGAAC TGTTGCAACC GGTCGTATCG
AACAGGGAGT CATTAAAGTG GGTGAAGAAG TTGAGATATT GGGTTTACGT
GAGGGGGGTG TTCCACTGAA ATCGACTGTA ACTGGGGTTG AGATGTTCAA
GAAGATTTTG GATAATGGAC AGGCTGGTGA TAATGTAGGA CTTCTTCTGC
GTGGGCTAAA GAGAGAAGAC ATTCAGCGTG GAATGGTGAT TGCTAAGCCT
GGTTCATGCA AGACATACAA GAAGTTTGAA GCAGAGATTT ACGTGCTCAC
AAAGGATGAA GGTGGACGTC ACACTGCATT TTTCTCTAAC TACAGGCCTC
AGTTTTACTT GAGGACTGCA GATATCACTG GCAAAGTGGA ATTACCCGAA
AACGTGAAGA TGGTTATGCC TGGTGACAAT GTCACAGCTG TTTTCGAGTT
AATCATGCCT GTCCCACTCG AAACAGGTCA AAGATTTGCC TTAAGGGAAG
GAGGTAGAAC AGTTGGAGCT GGTGTTGTAT CAAAAGTGAT GACCTAAACT
ACTCAAAAGC ACATTCTTCT CCTTCGTTCT CTAGGAATCC ATCAATTTCG
AGATTTTTCT TTTTGTCTTT TTGCTGCTTT GAGATTTCTT TGGGTAGATC
AAATAAACAG AGAGAAACTT AATTTATGTT TCCAATGAGA AAGATTAGGG
CAGAGGGCAC GAAACGTCTA TTTCTTTTTG ATGCTTCCTA CTTTGTGAAA
CTTTCAAAAA GCCACTTCCA ATTCTTTCTC ACCTTCGTGG TTTGTCAAGT
ATTTGTTTTT ATTTCTTTAA ACCAAAATCA TGAATTTTCG ATTATTAAAT
TAAGTTGACC AGAAATGAAA TATTTATTTC ATGTTTAGCG AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G02930.1 [+] show detail - GTP binding Elongation factor Tu family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Translation elongation factor EFTu/EF1A, bacterial/organelle 1.1e-270
HMMTigr Small GTP-binding protein 4e-09
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
FPrintScan Protein synthesis factor, GTP-binding 1.7e-22
PatternScan Protein synthesis factor, GTP-binding 0
HMMPfam Protein synthesis factor, GTP-binding 2e-60
HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 9.6e-36
HMMPfam Translation elongation factor EFTu/EF1A, domain 2 6e-17
Gene3D no description 7.1e-57
Gene3D no description 1.9e-46
Gene3D no description 5.6e-18
superfamily P-loop containing nucleoside triphosphate hyd 1.5e-63
superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 1.5e-37
superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 1.5e-33
HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 4.7e-234
HMMPanther TRANSLATION FACTOR 4.7e-234

See the detailed result >

AT4G02930.1

Model type
Protein coding
Short Description
GTP binding Elongation factor Tu family protein
Computational Description
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-K04 introduced

  • F08621 - Specific phenotypes were NOT observed.
  • F26716 - rosette leaf::abnormal / stem::abnormal / cauline leaf::dark green / cauline leaf::abnormal / whole plant::decreased height / stem internode::decreased length / rosette leaf::dark green / rosette leaf::decreased size / cauline leaf::decreased width / cauline leaf::abnormal / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

4 mutant lines found