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  3. RAFL09-49-K10

RAFL09-49-K10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08429)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-K10 - full reading 
ATTCTGTTTG TGAGTGTGTT TTTTTGGTCT ATATGAGTAA TGATGTTTCG 
TGGTATTCTG AAATCTGCAA AGGATGAGAA GAAGAAGATG GAGTCTCAAG 
GCAATGGAGC TGTTGCTAAT TCAGGAAAAT CTCTGGTTAA TCGCCGACGA 
GCTAACAAAG AAAAGAAAAT GGATTTGCTA CAAGATGTTG ATAAGCTTAA 
GAGGAAGCTG AGACAGGAGG AGAATGTTCA TAGAGCATTG GAGAGAGCTT 
TTACTAGACC TTTAGGAGCT TTACCTCGTC TTCCGTCTTA CCTCCCTCGA 
CATACATTGG AGCTTCTTGC TGAAGTAGCT GTTCTTGAAG AGGAAGTGGT 
TCGGTTAGAG GAGCAAGTTG TAAACTTTAG ACAAGGTTTA TACCAAGAAG 
CTGTTTACAT ATCTTCAAAG AGGAATCTGG AGAGTCCTAA TAACAACAGT 
TTGAATGAGA ATTCGCCCGT TAGAAGCACT AAACACCAGA GATCGAAATC 
AATGTCGCAA CACGAGTTCA ATTCTATGAT CACTCCCACT AAAAAGCATC 
AACAGTCTCT TAGCAGAAGC ATCTCAAGTA GGAAACTCTT CTCCTCTGAT 
CAAACAGTTA ATGACCGAAG TGGTCAGAGA GTGGTAAGTG GCAAACAAGC 
GTCGCCTAAA TCAAATCTAA GCAGTGTTAC TAATACTAAG CCAGTAGATG 
TGAGAGGGAA AGAGAATCAG ACCTCTAGTA ATGCTTCAAA AGACAAGAAA 
AATAAAGAAT CACCTGAGAA GAAGCTTGGC AGATTCTTGA CATCTGTGAA 
GAAGAAGAAA CCTTTGATTA AGCCGGAGGC TGCAGCGGAT AAACACTCAG 
AATCAACCAA ATTGCAGCTA GATGATAGAT TAGCAGATCA GGACAAAGCT 
CAAGAGAGTG TGTCAGGATC ATCTTCGGAA GACAAGACAC TGCAAAGTGG 
AAATGTAGCA AACAGAGTTT CAGAGGATTT ACTGAAATGT CTTGTGACTA 
TTATCTTGAG GATTAGCTCG TCCAAGGACA TTGTGTTGGA TCCATATAAT 
AACTGCTCAG AGTGGAGAAC AAGAGAACTT GGTGCATACA AGCATTTTTC 
GTCGGTCGAT ACATCTTCAG TTGATCTTGG ACGAAGAATC AATGCTTCAT 
TTCTGATCCA TCGTCTCAAG TTCCTGCTTA ATAAGCTTTC TGTTGTCAAT 
CTAGACGGTC TTAGCCACCA GCAGAAGCTT GCATTCTGGA TAAATACTTA 
TAATTCCTGC GTTATGAATG CATTCTTGGA GCACGGGATC CCGGCGACTC 
CTGAAATGGT TGTAGCGCTG ATGCAGAAGG CAACAATAAT TGTGGGAGGA 
CACTCGCTAA ATGCAATCAC AATCGAACAT TTCATCTTGA GACTTCCATA 
CCACTTGAAA TTCACTTGTC CCAAAACTGC AACACATGAA GAAATGAGAG 
CTCATAGCAC ATTTGGATTG GAATGGTCAG AGCCCTTGGT CACATTCGCT 
CTCGCCTGTG GAAGCTGGTC CTCTCCTGCT GTAAGGGTCT ACACAGCAGC 
TAATGTAGAG GAAGAGCTAG AAGCTGCAAA GAGAGATTAT CTGCAAGCAT 
CAGTTGGGAT ATCAAAGAAC AACAAACTAA TGCTTCCAAA GGTATTAGAT 
TGGTACTTAC TCGACTTTGC CAAGGATTTG GAATCGTTAC TGGATTGGGT 
TTGCCTTCAG TTACCTGATA AACTAAGAGA AGAAGCAACT AAGTGTATGG 
AGAGAAAGAA CAAAGAATCA CTAATGGAAT TGGTTCAAGT AGTACCATAT 
GACTTCAGTT TCAGATTGCT TTTGCATCAA TGAATAAAAA AATGTTAAAC 
ACTGTATAGA TTTGGGTTGG GGAGAGAGTA AAGTAGAGCG CATGAGTTCA 
ATTTGTTATT GTTTTTTTTG GTTGGCTGAG AGTATATATA GATTATATGG 
TTGTGTTCTT TTACTATAAA GTGATGTAAA ATTCATTCAA TTGATTTTTA 
TTTGTAATGC TATATATGTA TATGTCTACA CCATTTTTTT TTTGTCTGAT 
TTGTTTTTTC TTGTCTCCT

Gene models with high sequence identity

  1. AT4G37080.1 [+] show detail - Protein of unknown function, DUF547
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UNCHARACTERIZED 1.3e-101
HMMPfam Protein of unknown function DUF547 8.2e-39
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT4G37080.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF547
Computational Description
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-K10 introduced

  • F12044 - Specific phenotypes were NOT observed.
  • F18032 - Specific phenotypes were NOT observed.
  • F20851 - Specific phenotypes were NOT observed.
  • F23441 - Specific phenotypes were NOT observed.
  • F27015 - Specific phenotypes were NOT observed.
  • F27525 - Specific phenotypes were NOT observed.
  • F28931 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::abnormal / whole plant::decreased height / stem::present in fewer numbers in organism / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::increased width
  • F29222 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found