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  3. RAFL09-49-K11

RAFL09-49-K11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06421)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-K11 - full reading 
ATTTGCAGAA GAAAAATAAA AAAAAAAAAC AGAGAAAAGG AGATATGGAA 
TCAATCGGAG TCCTTATGAT GTGCCCCATG TCCTCCTACC TCGAGAACGA 
GCTTGAGAAG CGCTTCAACC TTCTTCGCTT CTGGACTTCT CCGGAGAAAT 
CCGTCCTCCT AGAAACTCAT CGGAACTCCA TCCGCGCCGT CGTTGGGAAT 
GCTTCTGCCG GCGCCGATGC TCAGCTCATC AGCGATCTGC CCAACCTTGA 
GATTGTATCC AGCTTCAGCG TCGGGCTCGA CAAGATCGAT TTGGGGAAAT 
GCAAAGAAAA AGGGATCCGC GTCACCAACA CCCCCGACGT TCTCACCGAA 
GACGTCGCAG ATCTCGCCAT CGGGCTTATC CTGGCTCTCC TTCGACGGCT 
GTGTGAGTGC GATCGCTATG TAAGGAGCGG AAAATGGAAG CAAGGTGAAT 
TCCAACTCAC TACCAAGTTT AGTGGAAAAT CCGTGGGGAT CATTGGTCTA 
GGTAGAATTG GGACTGCCAT CGCAAAGAGG GCTGAAGCCT TTAGCTGCCC 
AATCAATTAC TACTCAAGAA CCATTAAGCC TGATGTCGCC TACAAGTATT 
ATCCGACGGT GGTTGACCTT GCTCAAAACT CAGACATCCT CGTCGTCGCA 
TGCCCGTTGA CCGAGCAGAC CAGACACATT GTGGACCGGC AGGTCATGGA 
TGCATTAGGA GCTAAGGGCG TCCTCATAAA CATTGGCCGT GGACCACATG 
TTGATGAGCA AGAGCTTATT AAAGCTCTAA CAGAAGGCCG CCTAGGTGGG 
GCTGCCCTTG ATGTGTTTGA GCAGGAGCCT CACGTGCCCG AGGAGCTCTT 
TGGCCTTGAG AATGTAGTTC TCCTCCCTCA CGTTGGGAGT GGCACTGTGG 
AAACACGGAA TGCCATGGCC GATCTTGTCG TGGGTAACTT GGAAGCGCAC 
TTTTCTGGGA AATCACTTCT GACTCCGGTC GTCTGAGTCA TGTGACACAT 
TTGGGATTTG GTTTCACTTC ATTTGAAAGG TTTTTATGTT AACGAACTCA 
TGAAAAGGGT AATTTCTCTT CCAAAAGAAA GTTGCACTGT CGTATATAAG 
GAACGGATTT GAACACG

Gene models with high sequence identity

  1. AT1G79870.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther GLYCERATE DEHYDROGENASE 1.6e-202
HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.6e-202
superfamily NAD(P)-binding domain 1.8e-57
superfamily Formate/glycerate dehydrogenase catalytic dom 1.2e-31
PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
Gene3D NAD(P)-binding domain 3.7e-56
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 1.3e-54
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3.8e-26

See the detailed result >

AT1G79870.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-K11 introduced

  • F08012 - Specific phenotypes were NOT observed.
  • F08733 - Specific phenotypes were NOT observed.
  • F14414 - Specific phenotypes were NOT observed.
  • F22736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found