1. Home
  2. Full-length cDNAs
  3. RAFL09-49-L16

RAFL09-49-L16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08430)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-L16 - full reading 
AAAATCCAAG TCGACGAATA CGACGATTTT AGTTATTCGG CCGGAAAGGT 
TGATAATTTC GTGTGATTAA TCTATGGAGT TGGAATTTGA ATCAAAGTAC 
GAGATTAACC GTACGGCGGA GTTCATTATT AGCAAAAGCT TCACCAGAAT 
TGCTTTACAG TTCCCGGATG AGTTGTTAAA AGATTCGACT AAGGTCGTGA 
GTGCTCTTAA GAGCAAAACT CGTTTGCTTA CTGACAGAGA AGTCAGGTTC 
TTTGTAATGG CTGACACAAC TTATGGTAGT TGCTGTATTG ATGAAGTTGG 
AGCTTTGCAT ATTGATTCTG AATGTGTTGT TCATTACGGT CAAACATGTC 
TAAGCCCGAC ATCAGTTCTT CCAGCATTCT TCGTTTTTGG GAAAGCTTCG 
ATAAACGTCT CCAGCTGTGT TAAGCATTTG ATAGATTATG CGTCAAAGAG 
CGATAAGCCT ATCATGATTC TTTATGGTCT AGAATACGCG CATGTAATTC 
CACAAATCCG AGAAGAATTA GGATTATCGA AGACTGATTC TCAATTATCT 
GTAGCCAATG TCTTGTGTTC ATTCATTAGT CCATCCAAAG ATCCTAGAGA 
ATCCATGGAG CATCCGAGAC CATATAGCGA AAGTGATTCT AGTGATAGCT 
TATCCTCATC TAGGAGCTAT AGACTAGGAG GGCTAACTTG GGACTTGCCA 
GAAGGAAGCA AAATCGAGGA CTATTTACTT TTCTGGATAG GTTCTGACAG 
TTCAGCTTTT GCCAATGTAG TACTGACCTT CAATGGTTGT GACATAGTCA 
GATATGATGC TGAAGAAGAT TCTTTGGTGA CGGAATTTTA TCAACAAAGA 
AGGATACTTA AGCGACGATA TTACTTGGTG GAAAAAGCTA AGGATGCGAA 
TATTATAGGT ATTTTGGTGG GGACTCTTGG TGTTGCTGGT TACCTTCATA 
TGATTCACCA TATGCAAGCA CTCATATCTG CAGCTGGCAA AAAATCTTAC 
ATTCTTGCCA TGGGACGGCC TAACCCGGCC AAACTCGCAA ACTTCCCCGA 
GTGCGATGTT TTCATCTACA TCTCATGTGC CCAAACGGCT CTTTTAGATA 
GCAAAGAGTT CATGTCCCCT GTCATTACTC CGTTCGAAGC CAATCTTGCT 
TTTAGCAGAG GGAGTGAATG GACAGGTGCA TACCTAATGC ATTTCCAAGA 
TGTGATCAAC TCTGTAAAAT CAGAATCAGA AGCACATATC GGATCAGAGG 
AGCCACGGTT CTCCTTCTTT CAGGGTGGTT ACGTAGAAGA TCACAAAACA 
AATGATCAAG CTAAGAATGG AGAAGAAGAC ACAGGAGAGA CAATGACATT 
GGTACAAGCT GCAGAGAAAG CATTGCAGTT GCGAGGCAAT GATCATAACT 
CATTGACTAA ACAAACCGCT GCAAAATCAG GACCTGAGTA TTTCCTTAAC 
CGAGTTTATC GCGGTTTGGA GATAAATAGT GAGAATACTT TGCCGGAGCC 
TTATATAGTT GGGAGAAGCG GGAAGGCGTC TGGATACAAG CACGAGTAGC 
AACTCCAAGA AGTTGAGTTT GATCACAAAG AAAGATTTGT GCTATGTCAG 
ACACTGTTTT ACTGGCTTCC TATGAGATTG TTAGAAGAGA AAATGTTTGC 
ACACACACAA AATGTTTGCC GTCCATTATA TCCTTTTTCT CT

Gene models with high sequence identity

  1. AT3G59630.1 [+] show detail - diphthamide synthesis DPH2 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Diphthamide synthesis, DHP2 7.6e-189
HMMPanther Diphthamide synthesis, DPH1/DHP2 7.6e-189
HMMTigr Diphthamide synthesis, DHP2 3e-60
HMMTigr Diphthamide synthesis, DPH1/DHP2 1.1e-21
HMMPfam Diphthamide synthesis, DPH1/DHP2 8.6e-24
HMMPfam Diphthamide synthesis, DPH1/DHP2 3e-34

See the detailed result >

AT3G59630.1

Model type
Protein coding
Short Description
diphthamide synthesis DPH2 family protein
Computational Description
diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-L16 introduced

  • F05940 - seed::increased size
  • F15121 - Specific phenotypes were NOT observed.
  • F24734 - rosette leaf::increased size / rosette leaf::abnormal / rosette leaf::abnormal / stem::increased thickness

Mutant lines with disrupted or induced

3 mutant lines found