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  3. RAFL09-49-P22

RAFL09-49-P22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13470)

full reading [+] show sequence

Nucleotide sequence: RAFL09-49-P22 - full reading 
AATCGTTGGG AAAAGTTTGA TGATACGGAG TGGACAATTC TTGGTGTAGA 
AGGAGAATCT GAGAGAGAGA GAGTCATGGA AGCTCTGAAA ACCGCAACTT 
TTAGCCCTAT GTCGGTGTTA TCCGAGAAAA GATCAGAACC ACGAAAGCCT 
TTCTCGCTCC CTAACCTCTT TCCACCAAAA TCACAGAGAC CAATCTCCCA 
AGAAAGCTTC TTGAAGAGAT TCAATGGTGG ATTGGCTCTT CTAACTTCTG 
TTCTAAGCAG TGCAACAGCT CCTGCTAAAT CCCTGACGTA CGAGGAAGCT 
CTGCAACAAT CTATGACCAC TTCTTCATCT TTTGATTCGG ATGGTCTGAT 
TGAAGGGATA TCCAATTTTG TCACAGACAA TCCTTTGGTT ATTGCCGGTG 
GAGTTGCTGC ATTGGCTGTT CCATTTGTTC TGTCTCAGGT TCTGAACAAG 
AAGCCCAAAT CATGGGGAGT TGAGTCTGCT AAGAATGCTT ATACCAAGTT 
GGGTACTGAT GATAATGCTC AGTTGCTTGA CATAAGAGCT ACTGCTGATT 
TCAGACAAGT GGGCAGTCCT AATATTAAGG GTTTGGGTAA AAAAGCGGTT 
TCTACTGTTT ATAACGGTGA AGACAAGCCT GGTTTCCTGA AGAAGCTTTC 
TTTGAAGTTT AAAGATCCTG AGAACACCAC ATTATACATT CTGGACAAGT 
TTGATGGAAA CTCTGAGCTT GTTGCTGAAT TGGTGGCTCT TAATGGATTC 
AAATCTGCTT ATGCGATTAA AGATGGTGCA GAGGGACCTA GAGGCTGGTT 
GAATAGCAGC TTGCCTTGGA TAGAGCCAAA GAAGACTCTC AGCCTTGATT 
TAAGCAGTTT GACGGATAGC ATCAGCGGTG TATTTGGTGA GAGTTCTGAT 
GGTGTATCTG TCGCTCTTGG AGTAGCTGCT GCTGCTGGAT TAAGTGTTTT 
TGCATTTACA GAGATTGAAA CCATACTCCA ACTACTAGGT TCAGCTGCAC 
TTGTTCAACT TGCAGGCAAG AAACTTCTAT TTGCTGAGGA CCGAAAGCAA 
ACTCTAAAAC AGGTGGATGA GTTCTTGAAC ACAAAGGTTG CCCCTAAAGA 
ACTTGTTGAT GAGTTAAAGG AAATAGGAAA GGCTCTTCTT CCTCAATCAA 
CAAGCAACAA AGCTCTCCCA GCACCAGCAA CAGTAACAGC AGAAGCAGAA 
TCAGCTACAG CTACAACCAC CACAGTCGAT AAACCAGTAC CTGAGCCAGA 
AACAGTTGCA GCTACAACAA CCACTGTAGA TAAACCAGTA CCTGAGCCAG 
AGCCAGTGCC AGAGCCAGTG CCAGTGCCAG CGATTGAAGC TGCAGTCGCT 
GCACAAGTAA TCACAGAACC AACCGAAACA GAAGCCAAAC CAAAACCTCA 
TTCAAGACCT CTCTCTCCAT ATGCATCGTA CCCTGACTTG AAGCCTCCAT 
CTTCTCCGAT GCCATCGCAG CCCTGAAAAC AGCTAAGAAC AGTCTCTCTC 
TCGTTACTTA GTCTGGTTTT GTCCTCCTGC AAACAGAAGA ACAAAAGTGG 
TCGAATATTG TAACTTGTTC TTTTTTCTCT CGTTTTTTCT CCCGAACTTA 
GATGCTACTT TGTGTCGAAT CTGAGATAAG TGGACTTTGT TTTGTTTTTC 
TCCCTTTATA CCACCATTGA GTTCAAACAA GAGTCTGTCA TCGCGTTAAA 
GGGGATCAGA AGCTGTGTGA GGGGTGTATT GGACGAAATA AAAGTTGTGG 
GGAAATTTCC AAATG

Gene models with high sequence identity

  1. AT4G01050.1 [+] show detail - thylakoid rhodanese-like
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHITINASE 9.9e-86
HMMPanther CHITINASE 9.9e-86
superfamily Rhodanese-like 2.9e-07
Gene3D Rhodanese-like 7.1e-06

See the detailed result >

AT4G01050.1

Model type
Protein coding
Short Description
thylakoid rhodanese-like
Curator Summary
hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required for anchoring the FNR flavoenzyme to the thylakoid membranes and sustaining high efficiency photosynthetic linear electron flow.
Computational Description
thylakoid rhodanese-like (TROL); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G25480.1); Has 6015 Blast hits to 4196 proteins in 851 species: Archae - 23; Bacteria - 2268; Metazoa - 876; Fungi - 517; Plants - 614; Viruses - 167; Other Eukaryotes - 1550 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-49-P22 introduced

  • F01041 - Specific phenotypes were NOT observed.
  • F01536 - seed::increased length
  • F02537 - Specific phenotypes were NOT observed.
  • F14027 - Specific phenotypes were NOT observed.
  • F17647 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found