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RAFL09-50-D16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06444)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-D16 - full reading 
ATAAAAAGCC TAACGAAGAA GACGAAGAAG AAGAGGAACA AACAACCATG 
GGTGAAGTGG TTAAGGATGG AAGAGAAGAA GTGATCCAGG CATGGTATAT 
GGATGATAGC GAAGAGGATC AGAGACTTCC TCACCACAAG GATCCTAAGG 
AGTTTCTATC TTTGGACAAA CTTGCAGAGC TGGGAGTACT TAGCTGGAGA 
CTTGATGCTG ATAACTATGA AACCGATGAG GATTTGAAAA AGATCCGCGA 
ATCTCGTGGT TACTCTTACA TGGACTTTTG TGAGGTATGC CCGGAAAAGC 
TTCCAAACTA TGAAGTGAAA GTGAAGAGCT TTTTCGAAGA ACATTTGCAC 
ACTGATGAAG AGATCCGTTA CTGCGTTGCA GGAAGCGGTT ACTTTGATGT 
GAGGGATCGC AATGAAGCTT GGATTAGAGT ATGGGTAAAG AAGGGAGGTA 
TGATAGTCTT ACCTGCTGGA ATATATCATC GCTTCACCGT AGACTCAGAC 
AACTATATCA AGGCAATGCG GCTTTTCGTG GGTGAACCGG TCTGGACACC 
ATACAATCGC CCACACGACC ACCTCCCTGC AAGGAAAGAG TACATCGATA 
ATTTCGTGAA GGTGAATGAA GGTGGTGTCA TAGACGCGTC AGCCTAGAGG 
ATTCTCAGTC TTATGCATCA GATTTCTATA AACTAAGCAT ACAATAAAGA 
GAGCTTTCTG TCTCATGTTG GATATTATGT CATCTACAGA TCCACTTGTG 
AAGAAACTTT GATTCGTGTG GCTTTGGCAT TATGGTTGTG TTGTAACTGT 
ATTTATAGTT TATACTCCAG AAATCAAACT GTGTTACATT

Gene models with high sequence identity

  1. AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Acireductone dioxygenase, ARD 5e-69
HMMPanther Acireductone dioxygenase, ARD 1.8e-96
Gene3D RmlC-like jelly roll fold 3.8e-75
superfamily Cupin, RmlC-type 2e-45

See the detailed result >

AT4G14710.2

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-D16 introduced

  • F04532 - Specific phenotypes were NOT observed.
  • F06239 - seed::increased size
  • F11825 - Specific phenotypes were NOT observed.
  • F12908 - Specific phenotypes were NOT observed.
  • F18021 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found