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  3. RAFL09-50-D22

RAFL09-50-D22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06445)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-D22 - full reading 
AAATTTCGTC GTAATTGGCA ACAGTTAAGC TCTTTGCTAA AAGCTCTAGC 
TGAGAAGCGA AATTCGAAGT GAAGAATGTC TAATCGCAAA TTCGGAATGG 
AAGGATTCGG CATTAATCGG CAAACTAGCT ACAGTTTCGA GCGATCTCAA 
GCACCGCAAC GTCTCTACGT CCCTCCCTCG TCTCGCGGCG GAGACAACTC 
CGAAGATGCC GATCTTGATA ACATTGATTA CATGGAAAAC GAAGAAGCTG 
AGGAAGATAT TGAGGAAGGC GGTTCTGCTG CGGCTAGCGG TGGCGAGGTT 
GATGAGATCG ATCCATTAGA TGCTTTTATG GAGGGAATTC ACCAGGAGAT 
GAAATCTGCT CCACCTCCTA AGCCAAAGGA GAAACTAGAG AGGTACAAGG 
ACGACGATGA CGATCCTGTT GAGAGTTACC TCAAGGCCAA GAAGGATTTG 
GGCCTGACAC TAGCCGCCGA TGCACTTAAC GCCGGTTATA ACTCCGACGA 
GGAGGTGTAT GCTGCAGCTA AGGCGGTCGA TGCAGGGATG CTAGATTATG 
ATTCCGATGA TAATCCGATT GTTGTGGATA AAAGGAAGAT TGAGCCTATT 
ACAGCTCTGG ATCATAGCTC CATCGATTAT GAACCTATTA ATAAGGACTT 
TTACGAGGAG CTAGAATCAA TATCAGGAAT GACTGAGCAA GAAACCACGG 
ATTACCGTCA GAGATTAGGG ATTCGGGTCT CGGGTTTTGA TGTTCATAGG 
CCAGTTAAGA CCTTTGAGGA TTGTGGATTT TCCTCACAGA TTATGAGTGC 
TATCAAAAAG CAAGCTTATG AAAAACCTAC AGCAATCCAA TGTCAGGCTT 
TACCTATTGT GTTGTCTGGT CGAGATGTTA TTGGCATAGC CAAAACTGGT 
TCAGGTAAGA CTGCAGCGTT TGTTCTTCCA ATGATTGTTC ATATTATGGA 
TCAGCCTGAA CTTCAGAGAG ATGAAGGTCC AATTGGTGTC ATATGTGCTC 
CAACCAGAGA ATTGGCTCAT CAAATCTTCT TGGAAGCCAA GAAATTTTCG 
AAAGCATATG GCTTACGAGT CTCTGCTGTG TATGGTGGAA TGTCTAAACA 
TGAACAGTTT AAGGAACTCA AGGCAGGATG CGAAATAGTT GTTGCTACTC 
CTGGAAGGTT GATAGACATG CTGAAGATGA AGGCTTTGAC AATGATGAGA 
GCCAGTTATT TGGTTCTTGA TGAGGCAGAT CGGATGTTTG ACCTTGGCTT 
TGAGCCACAA GTAAGGTCTA TTGTTGGCCA GATTCGTCCT GATCGCCAGA 
CTTTACTATT TTCAGCCACT ATGCCTTGGA AAGTTGAAAA GTTAGCTAGG 
GAAATCCTTT CAGATCCTAT TAGAGTCACA GTTGGTGAAG TGGGGATGGC 
CAATGAAGAT ATTACGCAGG TTGTCAATGT CATACCTTCT GATGCTGAAA 
AACTTCCCTG GCTACTTGAA AAGCTCCCTG GAATGATTGA TGAGGGTGAC 
GTATTAGTGT TTGCATCTAA AAAGGCCACT GTTGATGAGA TTGAAGCTCA 
ACTTACTCTA AATTCCTTCA AAGTTGCTGC TCTTCACGGT GATAAAGACC 
AAGCATCACG AATGGAAACT CTGCAGAAGT TCAAATCTGG AGTTCACCAT 
GTGCTGATTG CCACTGATGT TGCTGCCCGA GGTCTTGACA TCAAATCGCT 
TAAGACAGTG GTTAACTATG ACATCGCAAA AGATATGGAC ATGCATGTAC 
ATCGTATTGG TAGAACAGGC CGTGCCGGTG ACAGAGATGG GGTTGCCTAC 
ACACTTGTTA CGCAGAGAGA GGCTAGATTT GCTGGTGAAT TGGTAAACAG 
TCTGGTTGCT GCTGGTCAAA ATGTGCCTCC AGAACTCACA GATCTTGCCA 
TGAAGGATGG ACGATTCAAG TCCAAGCGTG ACGGGAGAAA AGGAGGTAAG 
AAAGGCCGAG GAGGAGGTGG TGGAAACAAA GGAGTACGTG GAGTTGATTT 
TGGTCTTGGT ATTGGATTTA GCTCGGAATC TAGTAGGACA CCTTCTTCTA 
AAGCTGCACC AAGTAGAAGT GGGGCAATCA ATTCAGTGAG AACTGGAGTA 
ATGGCCCAAT TCAAGAATAG TTTTGTCGCT GCAACGCCAT CAAATCCACA 
AAACCAAGCT TATCCAAACA AGAGACCATC CCTAATGGGC TTTGTCTCAG 
GTGGTACTAT TGGTGGAGAC ATGGGTAGAA CTCAGAGTCA AGCTCCCCCA 
GTAGCACCTA CTCAAAACGC CTCATCACAC AACTCCAGCC AGAATCACTC 
ACAGAGTTCT GAGAATCGGC CTAGAGAGAG GAAGAGAAGA TCTGGTTGGG 
ATAATTGAGT GAGCCACGTT TTGCATGATG ATAGTGGAAG TGTTTTGCAC 
AACAATGTAA TGAATGTTGT ATAATTTGTT TTATCCTTTC CCGTTTCAGC 
CTTTGAATAT ATAAATTTTC CATTTCTAAA AC

Gene models with high sequence identity

  1. AT2G47330.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Helicase, superfamily 1/2, ATP-binding domain 32.232
ProfileScan DNA/RNA helicase, C-terminal 21.399
ProfileScan RNA helicase, DEAD-box type, Q motif 11.345
superfamily P-loop containing nucleoside triphosphate hyd 2.9e-69
superfamily P-loop containing nucleoside triphosphate hyd 2.4e-38
HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 3.3e-50
HMMPfam DNA/RNA helicase, C-terminal 1.2e-23
PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
Gene3D no description 1.1e-72
Gene3D no description 7.2e-38
HMMSmart DEAD-like helicase, N-terminal 1e-64
HMMSmart DNA/RNA helicase, C-terminal 9.7e-31
HMMPanther DEAD (ASP-GLU-ALA-ASP) BOX POLYPEPTIDE 42 1.8e-277
HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.8e-277

See the detailed result >

AT2G47330.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-D22 introduced

  • F06615 - Specific phenotypes were NOT observed.
  • F07812 - Specific phenotypes were NOT observed.
  • F08129 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found