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  3. RAFL09-50-F07

RAFL09-50-F07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06447)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-F07 - full reading 
CCCAAATACA AAACTCCCGA AAATCTCTCT CTTTTATTCT TTCTTTCTTC 
TTCTTCTTCC CCAACTTGAA AAAAAAAAGT AAACACGAAA ATGTCTCCGT 
CTTGGCTCCG CCCAACCGCC GATCACAATC ATCCTCCACC GCAACCGCCG 
TCGCAATCAC CGTCCCCTCT ATCTTCCGGT GATCCGAATC TCACAACATG 
TCTCTACCAA ACAGATCACG GCGTCTTCTA TCTAACATGG TCCCGAACTT 
TCTTAGGAGG CCACTCTGTG AATCTCTTCC TCCATTCACA AGATTACTAC 
AACCACTCTT CGCCACTCTC TTTCTCCTCC GCTGATCTCT CTCTTTCCTC 
CGCCGTCTCT TTCCATCTCA ACTTAAACAC ATTAGCTTTC TGGAAAAAAC 
GTGGATCCAG ATTCGTTTCT CCCAAAATCC AAGTCTTCTG GGACTTAAGC 
AAAGCCAAAT TCGACTCTGG ATCCGAACCT AGATCCGGAT TCTACATCGC 
TGTAGTTGTT GACGGAGAGA TGGGACTATT AGTCGGAGAT TCAGTCAAAG 
AAGCTTACGC TCGTGCTAAA TCGGCGAAAC CTCCGACGAA TCCGCAAGCT 
CTTCTGTTGA GGAAAGAGCA CGTGTTTGGA GCTAGGGTTT TCACAACGAA 
AGCGAGATTT GGAGGGAAGA ACAGAGAGAT TTCTATTGAT TGTCGTGTTG 
ATGAAGACGC TAAGCTCTGT TTTAGCGTTG ATTCGAAACA GGTTCTGCAG 
ATCAAGAGAC TTAGATGGAA ATTTAGAGGA AATGAGAAAG TTGAAATCGA 
TGGAGTTCAT GTTCAGATCT CTTGGGATGT ATACAATTGG TTGTTTCAGA 
GTAAAAGTTC CGGTGACGGC GGAGGAGGAG GAGGACACGC CGTGTTTATG 
TTTAGATTCG AGAGTGATCC AGAAGCAGAG GAGGTTTGTG AAACGAAGAG 
GAAAGAAGAA GAAGATGAGA AAAATCGAAA CGGTATCGTT TTATGGAAGC 
CGAAGAAGCA ATGTGGAAAT AGTTTTGGGA TTAAAGGGAT TGTTGAGTGG 
AGGAAGATGA GGAAGAGATT TGTTAAGAGT AAGAGAAGTT CTTCGTCGTC 
TTCGATTTCG ATGTCGTCGG CTTCTTCGGC GTGTAGCTCG TCGGTTATGG 
AATGGGCTAG TAGTGCTGAT GAGGCGGAGT ACGGCGGAGG AGGTTGTTCT 
GGTTCCGGTT CCGGCAATGG TCTTGGATTC TCATTACTGG TTTACGCTTG 
GATTAAGTGA AAATATTCTT TTTCGAGGGA AATAAGAAGT TACTGTTTTC 
GGTTAATTTT TTTTTTTAAT ATGTTCTTCT TTCTTTTTTA TATTAATTTT 
CCCTCTGAAA CC

Gene models with high sequence identity

  1. AT5G11000.1 [+] show detail - Plant protein of unknown function (DUF868)
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

See the detailed result >

AT5G11000.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF868)
Computational Description
Plant protein of unknown function (DUF868); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G25200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-F07 introduced

  • F02002 - Specific phenotypes were NOT observed.
  • F02010 - seed::decreased size / seed::decreased length
  • F02448 - Specific phenotypes were NOT observed.
  • F09438 - Specific phenotypes were NOT observed.
  • F13207 - Specific phenotypes were NOT observed.
  • F23734 - seed::increased size / seed::increased length
  • F27048 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found