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  3. RAFL09-50-G20

RAFL09-50-G20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06449)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-G20 - full reading 
GAGACAAATC TAGTGATGGG TTGCGACTCA CATGGAAATC TAAGCGACAC 
AGAGTTCAGC AAGCCGTTGC CATCCATAGG TGTATATGTC GCTGCAGCTT 
CACTGATCTG TGGAGTTGCT ATGTTTTCCG ATCTTCTTCA CGGCTTCCGG 
CACCGTAAGT TCTGGTTTCC TTGCAAATTC TTCTCTCTCA ACGCTACCAC 
TCTCACCTTT ATCTCTGTAT GCGTCAAACT CTCATTGGAT CTCAACACTT 
CTATGCCTAG TCGCCAAGAT CAGCTTGCTA AACTCAGCAG CAGCGTCTTC 
GTATGCACCG TGATGGCTAA TTCCATGCCT TCTCTTGGTT ACATGGTCAC 
GCAAGATCTC CTCATGAACC TCACGGCTCT TGGGATTCTA GTCATCACCG 
ATGTTGTTAA CATCTGTATC CAATTGGGTA CAGGAGCTAT ATATGTGTTC 
CCTCAAGAAC ACGCTCTGGT CATTATTCTC ATGCTTTTGA TGTTTATGAT 
CTTGAGTTTC TCTGCTATCA CTGTCCCAGC CACAAAGCGT TTCTTGGAGC 
TCAAGTACAA GAAGAGATAC GAGTTTGCTT TGAAGCAGTG TCCTTCGTAT 
ACAGAGAGAA GAAGAGGGGT TCCTAAGCTT AAAGAAGATC TGATGAAATT 
CTGGATGATG GCTCACACTT CTAGCCCTCA GTTTGTGATG GCTCGCTCTG 
TTACTTGCAC CACCACTGGT TTCCTCTGTT TCTTGATTGC AATCACATTG 
GCTGAAGCCA TGGTCCGGTC TTACTTTCTT CAACCCCGGT CACTGGGGTT 
CTGCAATGGA GATTCTGATT ACAAATGGTC AACCACTTTG GTTCTAGTCT 
CCCAGACAGC TGCAGTGGCC ATAGGAACCG TTGCTCCAGC GAGCAGATGG 
CTCAAGGCAG TGAACTTTAG GTGTCCATTT AGAAACAAGA AATCTTTGAA 
AGATGAGTTA AGAGTAGAGA GTTATTGGGT AGAGTGTCTC GCTGAGAAGA 
AAGAACGTCC CTTGAACTTT TGGATGCTCC ATGGTCGCTG CAGCAGGAAG 
CTTGCACACG ACTTAAACCG GTTGATGCTT GATATCTGCA TTGCAACACA 
GTATGGTATA GTGCTGGCTA GCAAGTTTCT CCGTTTCATC ACGGTCTATT 
GTTCGAGTAG AATCTTGCTA TGTTGTTTTC ATTTCACCTT CAAAAGTGAT 
TCTGTTGCAA ACGCTGAGTC CTCCGGTTCA AATCCATCAA CCAGACAATT 
CGTTCTGCAT CTTGAAGGAG AGGAGGAGAT GGTGGACTAC ATGGCACGTA 
GCAACCGTGT GGCCACAGAC CACTTGATAC AAAAGGGTCG GAAGAAACAA 
CCTGTAAACT TGATAGAGCT CTTGGAGGCA ACAACTTTCA TCTCAAAAGG 
ATTTGAAGGG ATTCGAGATT TTGACAGCGA CGAGGTTTCT TCTCTGGCCT 
CTGGAGAGCC ACCTAATAGT TGGGCCCTTC CATTGGTAAC ACTGACGAGT 
ATCGCTGTCG CTCTTCCTAA CATCAAGCCT TGCTCGCTCA AGAAGTTAGT 
GAAAGCTGTA AACGAGGCAT TGGTCTATGT CAACAAGTTC GAAGAGGTCT 
TAGACATCGA AGGAGAGTTA GCTAACAGCA GGAAAGCTGC AGAAGTTGTT 
TGGTTAGGAG TTGATCTCTA CCATAAATGG CTCAACGTGG ATCTTCGAAA 
ACTATCCAAG CAACATAGCA AAACACCACA GGAAGTTCTT AAAGAGCTGG 
TAGATATAGC ACAAAAAGAG TTTACAGAGT CATGGGAGAA AAATCGGATA 
CTATGCATGA AGCATAAGCC CTCGCACTGG CCCATCAAGA CTCAAGCAGC 
AAACTCAATG TACCGAATCA GCCAAACCCT TTTGATGAAG TACGAATCAA 
GAAACATTGA AACAGAGGAG ACTCTGTTGA AAGATGTGGA AAAGATGGTA 
TCGGACATAG TATCAGGATG CTTTTGCAAC ACGGCACAAG TTATTGGAAT 
GAAGTGTTTG GTTACAGCAG TGGAAGTGAG GGAAGCGTCG GTGAGAGAAG 
CGGCAATGCA TTTGGGGAGA ACAGAGAAGA TACTTGAGAT CGTAGACAGG 
AGATGCATGC CTGCTTTGTC TCATCACAAA GTGGCAAAGA TTGATGAATG 
GAGAGAGTTT TATAGGACCA ATAAATCCAT CACTTTCACT CATCCTTCGT 
CCCAGTGTAC GACCCGTGAA CTCATTATCA ACCTAGAATA ACACATTTTC 
TTGTCACATT TAAAGAATTA ATTACGTTTT GTACATGATA AAACCTAATT 
AGCAAATAAA ATCCTTTCTT TGTCGGTTG

Gene models with high sequence identity

  1. AT4G17250.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1); ...
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

See the detailed result >

AT4G17250.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1); Has 31 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-G20 introduced

  • F23029 - seed::increased size / seed::increased length
  • F23638 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found