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  3. RAFL09-50-G22

RAFL09-50-G22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06450)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-G22 - full reading 
AGGAAAGACT AAACACTTCG AGAAAAGAAC CAACCCGGAG TGGAATCAAG 
TTTTCGCATT TTCAAAAGAC AAGGTCCAAT CCTCTACTGT TGAAGTCTTT 
GTGCGCGATA AGGAGATGGT TACAAGAGAT GAATACATCG GGAAGGTTGT 
GTTTGATATG CGTGAGGTTC CTACAAGAGT TCCTCCTGAT AGTCCACTTG 
CACCTCAGTG GTACAGATTA GAAGATCGGC GAGGTGAGAG TAAGAAAAGA 
GGAGAGGTTA TGGTAGCGGT TTGGCTTGGG ACGCAAGCCG ATGAAGCATT 
TCCTGATGCT TGGCATTCGG ATGCTTCCTC TGTTCAAGGA GAAGGTGTCC 
AAAGCGTGAG GTCTAAAGTC TATGTATCTC CCAAATTGTG GTATCTGCGG 
GTTAATGTCA TCGAGGCGCA AGATGTTGAG CCTAGTGACA GGAGCCAACC 
ACCTCAAGCT TTCGTTAAAG TACAAGTTGG GAATCAGATT CTGAAAACAA 
AGTTATGTCC TAACAAGACG ACGAATCCGA TGTGGAACGA AGATCTTGTT 
TTTGTAGCTG CAGAGCCATT TGAAGAACAG TTCTTCTTGA CGGTCGAAAA 
CAAGGTGACA CCAGCTAAAG ATGAAGTCAT GGGGAGGCTG ATCTCACCTT 
TGAGCGTATT TGAGAAAAGG TTAGATCACA GAGCTGTTCA TTCCAAATGG 
TACAACCTCG AAAAGTTTGG GTTTGGGGCT CTGGAAGGAG ACAAGAGACA 
CGAGCTCAAG TTCTCCAGCC GAATCCACCT ACGAGTTTGC CTTGAAGGAG 
GTTACCATGT AATGGACGAG TCAACTCTGT ACATCAGTGA CGTGAAACCT 
ACGGCAAGGC AACTATGGAA GTCTCCTATT GGCATCCTTG AAGTAGGAAT 
CTTGAGTGCT CAAGGGCTAT CGCCTATGAA AACAAAAGAC GGTAAAGCGA 
CAACAGATCC GTATTGTGTT GCCAAGTACG GTCAAAAATG GGTGAGAACA 
AGAACCATCA TTGACAGCTC TAGCCCTAAA TGGAATGAGC AATACACATG 
GGAAGTGTAT GATCCTTGTA CAGTTATCAC ACTGGGAGTT TTCGATAACT 
GTCACCTTGG CGGAAGTGAG AAATCGAACA GTGGAGCCAA AGTGGATTCG 
AGAATCGGGA AGGTAAGGAT CCGGTTGTCG ACTCTAGAGG CTGATAGAAT 
CTACACTCAC TCCTACCCTC TTCTTGTTCT GCAAACAAAA GGGTTAAAGA 
AAATGGGAGA AGTCCAATTA GCTGTGAGAT TCACTTGTCT ATCCTTGGCT 
CACATGATCT ATCTTTATGG CCATCCTCTG CTTCCAAAGA TGCATTATCT 
CCATCCATTC ACTGTGAACC AATTAGACAG TCTAAGATAC CAAGCAATGA 
GCATTGTCGC AGCACGGTTA TCTCGAGCAG AGCCTCCTTT AAGGAAAGAG 
AACGTAGAGT ACATGCTTGA TGTTGATTCA CACATGTGGA GCATGAGAAG 
GAGCAAAGCT AACTTCTTCA GGATAGTGTC TGTGTTTGCA GGCTTGATTG 
CTATGAGTAA ATGGCTCGGA GACGTCTGCT ACTGGAAGAA TCCGTTGACG 
ACGATATTAT TCCACGTTCT CTTCTTTATA TTGATTTGTT ATCCGGAGCT 
GATACTCCCA ACCACATTCC TCTACATGTT CTTGATAGGG CTTTGGAATT 
TCCGGTTCAG GCCGCGTCAT CCTGCTCATA TGGACACAAA GGTATCTTGG 
GCTGAAGCGG CTAGCCCTGA TGAGCTAGAT GAGGAATTTG ATACTTTCCC 
AACTTCAAAG GGACAAGATG TTGTGAAGAT GAGGTATGAT AGGTTAAGAA 
GCGTTGCGGG TCGGATCCAG ATGGTTGTTG GAGACATTGC AACGCAAGGA 
GAGAGGTTTC AGGCTTTGTT GAGTTGGAGA GATCCGCGTG CGACTTGCTT 
GTTTGTGATT TTTTGTCTTG TTGCTGCGAT GATTTTGTAC GTGACGCCTT 
TCAAGATCAT AGCTCTTGCG GGTGGGATGT TCTGGATGAG GCATCCTAAG 
TTCAGAAGCA AGATGCCTTC TGCTCCAAGT AACTTCTTCA GGAAATTACC 
TTCAAAAGCA GATTGTATGC TTTGAATTGT AAAACTTCTT TGTGGCTTTT 
AGGTCTTCTC TGCTCGTAAC TTGTGTTTCT TGTGTTCGTG TGTTTATCTG 
CTCTGTTTTA TTATTTTGTT CTGTTTGCTT CTATTCTTAT CATGTACTGT 
GTTGTTGGGT TTACTCTAAA ACCCAAAAGT AGTGGGCTTT AGTTATAATG 
TTTTGTTTGT ACGTTTTTTC CTTCTCTTAA AAAGAAATAA AATTCAATAG

Gene models with high sequence identity

  1. AT5G06850.1 [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SYNAPTOTAGMIN 2.3e-13
Gene3D no description 6.4e-08
Gene3D no description 4.9e-14
Gene3D no description 3.8e-18
HMMSmart C2 calcium-dependent membrane targeting 20
HMMSmart C2 calcium-dependent membrane targeting 6.3e-08
HMMSmart C2 calcium-dependent membrane targeting 2.1e-15
ProfileScan C2 membrane targeting protein 9.805
ProfileScan C2 membrane targeting protein 11.3
ProfileScan C2 membrane targeting protein 10.826
HMMPfam Phosphoribosyltransferase C-terminal, plant 2.2e-80
HMMPfam C2 calcium-dependent membrane targeting 3.2e-06
HMMPfam C2 calcium-dependent membrane targeting 7.9e-13
HMMPfam C2 calcium-dependent membrane targeting 7.8e-17
superfamily C2 calcium/lipid-binding domain, CaLB 1.1e-24
superfamily C2 calcium/lipid-binding domain, CaLB 4.2e-23
superfamily C2 calcium/lipid-binding domain, CaLB 2.7e-16

See the detailed result >

AT5G06850.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT5G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-G22 introduced

  • F18430 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found