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  3. RAFL09-50-H11

RAFL09-50-H11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06454)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-H11 - full reading 
GTGAGAAGAG TTTATAATCT CGAGAAATCT TTTTGGGCGA CGTTGTTTGC 
TCGGAGCTCT TTCTCCGATT TGTCTCCATT TTCGGTGATT TAAAGTTAGG 
ATTTGGCTGT GGAGATGTCT TCACTTACCT CCGTCGAATT GAATTTTCTG 
GTTTTCCGAT ATCTTCAGGA ATCAGGGTTT ACACACGCTG CATTCACTCT 
AGGTTATGAG GCAGGGATTA ATAAATCCAA CATTGATGGG AATATGGTTC 
CACCTGGTGC TCTTATCAAA TTTGTTCAGA AAGGTCTTCA GTACATGGAG 
ATGGAAGCTA ATTTGAGCAA TAGTGAAGTG GACATTGATG AGGATTTCTC 
ATTCTTTCAA CCCTTGGATC TGATTTCAAA GGATGTAAAG GAACTGCAGG 
ATATGCTGAG GGAAAAGAAG AGGAAAGAGA GGGATATGGA GAAGGAAAGA 
GACAGATCTA AAGAAAACGA TAAAGGGGTT GAACGAGAAC ATGAAGGAGA 
TCGCAACCGA GCTAAGGAAA AGGATAGGCA CGAGAAGCAG AAGGAACGAG 
AGAGGGAAAG GGAAAAATTG GAACGTGAAA AGGAGAGGGA AAGAGAGAAG 
ATAGAACGAG AAAAGGAACG GGAAAGGGAG AAGATGGAAC GGGAAATATT 
TGAGAGGGAG AAGGATAGAT TGAAATTAGA GAAAGAAAGA GAAATAGAAC 
GGGAGAGGGA AAGAGAGAAG ATAGAGAGGG AAAAGAGCCA TGAAAAACAG 
CTTGGAGATG CTGATAGGGA AATGGTTATT GACCAAACTG ACAAAGAAAT 
TGCTGGGGAT GGTTCTACAG GCGCAGAACC TATGGATATT GTTATGACTC 
CCACATCTCA GACAAGTCAC ATTCCTAATT CTGATGTGAG GATTTTGGAA 
GGGCATACTT CTGAGGTTTG TGCTTGCGCA TGGAGTCCCT CAGCTTCACT 
TCTTGCGTCA GGGTCTGGTG ATGCAACAGC GCGAATCTGG AGTATTCCGG 
AAGGATCATT CAAAGCTGTG CATACTGGTC GTAATATCAA CGCTTTAATC 
CTGAAGCATG CAAAAGGCAA GTCAAACGAG AAGAGCAAGG ATGTGACCAC 
TCTTGACTGG AATGGTGAAG GGACTTTACT TGCAACTGGT TCATGTGATG 
GCCAAGCAAG AATCTGGACT TTAAATGGTG AACTGATAAG TACTCTTAGC 
AAACACAAGG GACCTATTTT TTCCCTTAAG TGGAACAAGA AGGGGGACTA 
TCTTCTAACC GGTAGTGTTG ATAGAACTGC TGTTGTTTGG GACGTAAAGG 
CAGAGGAGTG GAAGCAACAA TTTGAATTTC ATTCAGGTCC AACACTTGAT 
GTTGATTGGC GCAACAATGT ATCTTTTGCA ACGAGTTCCA CGGACAGCAT 
GATCTACTTA TGTAAGATTG GAGAAACTAG GCCTGCCAAA ACCTTTACTG 
GGCATCAGGG TGAGGTCAAC TGTGTGAAAT GGGATCCTAC TGGTTCATTA 
TTGGCCTCAT GCTCAGATGA TAGTACTGCT AAGATATGGA ATATAAAACA 
AAGCACCTTT GTTCATGACC TCCGAGAGCA TACTAAGGAA ATTTATACAA 
TCAGATGGAG CCCTACAGGA CCAGGAACTA ACAATCCTAA CAAACAGCTA 
ACTCTTGCAA GTGCATCATT TGACTCAACA GTAAAGCTAT GGGATGCAGA 
ACTCGGGAAG ATGCTCTGTA GTTTCAATGG ACACAGGGAA CCGGTTTACT 
CACTGGCGTT TAGTCCAAAC GGGGAGTACA TAGCGAGTGG GTCTTTGGAC 
AAATCGATAC ACATATGGTC GATTAAAGAA GGTAAAATCG TAAAGACATA 
CACAGGAAAT GGAGGGATAT TCGAAGTGTG TTGGAACAAA GAAGGTAACA 
AAATCGCAGC TTGCTTCGCT GATAACTCAG TTTGCGTTCT TGATTTCAGA 
ATGTAGTTTT CTTAATTGTA GTCCTAATAA CACTCTCTCA GTCCAAGGTG 
TTTCTTTTTG TTGTTGCACA TATCTATAAG TTATAACACT AAATTCG

Gene models with high sequence identity

  1. AT5G67320.1 [+] show detail - WD-40 repeat family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily WD40 repeat-like-containing domain 2.3e-78
superfamily WD40 repeat-like-containing domain 2.5e-13
PatternScan WD40 repeat, conserved site 0
PatternScan WD40 repeat, conserved site 0
PatternScan WD40 repeat, conserved site 0
HMMPfam WD40 repeat, subgroup 4.5e-11
HMMPfam WD40 repeat, subgroup 3.9e-06
HMMPfam WD40 repeat, subgroup 1e-07
HMMPfam WD40 repeat, subgroup 4.8e-13
HMMPfam WD40 repeat, subgroup 5.2e-09
HMMPfam WD40 repeat, subgroup 3.5e-12
HMMPfam WD40 repeat, subgroup 0.0092
HMMPfam LisH dimerisation motif, subgroup 1.6e-08
Gene3D WD40/YVTN repeat-like-containing domain 3e-15
Gene3D WD40/YVTN repeat-like-containing domain 3.5e-69
HMMPanther TRANSDUCIN BETA-LIKE 1 2.3e-267
HMMPanther WD40 REPEAT PROTEIN 2.3e-267
FPrintScan G-protein beta WD-40 repeat, region 3.3e-07
FPrintScan G-protein beta WD-40 repeat, region 3.3e-07
FPrintScan G-protein beta WD-40 repeat, region 3.3e-07
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
HMMSmart LisH dimerisation motif 4.5e-05
HMMSmart WD40 repeat 2.9e-10
HMMSmart WD40 repeat 0.0014
HMMSmart WD40 repeat 2.4e-09
HMMSmart WD40 repeat 9.5
HMMSmart WD40 repeat 2.5e-12
HMMSmart WD40 repeat 3.9e-08
HMMSmart WD40 repeat 1.8e-11
HMMSmart WD40 repeat 0.038
ProfileScan WD40 repeat 2 15.087
ProfileScan WD40 repeat 2 10.776
ProfileScan WD40 repeat 2 14.151
ProfileScan WD40 repeat 2 16.29
ProfileScan WD40 repeat 2 10.241
ProfileScan WD40 repeat 2 18.395
ProfileScan WD40-repeat-containing domain 57.713
ProfileScan LisH dimerisation motif 10.13

See the detailed result >

AT5G67320.1

Model type
Protein coding
Short Description
WD-40 repeat family protein
Curator Summary
Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
Computational Description
high expression of osmotically responsive genes 15 (HOS15); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-H11 introduced

  • F25802 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found