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  3. RAFL09-50-K07

RAFL09-50-K07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06462)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-K07 - full reading 
ATTCCTTTCG TTTATCGTTT TCTTCTTCCA ATTTTGGATC TCTCTTCCTT 
TTGATCTGAT TCGTTACTTG CTCTATGTTG CTTCAATTTT GAATTCTTTT 
GATTTTTGAT TGTGTGGGGG AGATGGGGCA ATGTTACGGG AAGGTTAATC 
AGAGTAAGCA AAATGGTGAA GAAGAAGCTA ACACGGCTAC TTATGTTGTT 
TCCGGCGACG GGAATCAGAT TCAGCCTCTA ACTCCGGTTA ATTACGGTCG 
AGCTAAGAAC ACTCCAGCTA GGTCATCGAA TCCGAGTCCT TGGCCTAGTC 
CTTTCCCTCA CGGATCAGCG AGCCCTCTTC CTTCTGGTGT TTCTCCTTCT 
CCGGCCAGAA CTTCCACTCC GAGGAGGTTT TTCCGACGGC CTTTCCCGCC 
GCCTTCTCCA GCCAAACACA TTAAGGCTTC TTTGATCAAA CGTCTTGGAG 
TGAAGCCTAA GGAAGGTCCG ATCCCTGAGG AGAGAGGAAC TGAGCCGGAG 
CAGTCGCTTG ATAAGAGCTT TGGTTATGGC AAGAATTTTG GTGCTAAGTA 
CGAATTGGGG AAAGAAGTGG GTCGAGGGCA TTTTGGTCAT ACTTGTTCTG 
GCCGTGGTAA GAAGGGAGAT ATTAAGGATC ATCCTATTGC TGTCAAGATC 
ATCTCCAAGG CTAAGATGAC AACAGCAATT GCAATTGAAG ATGTTCGCAG 
GGAGGTGAAG TTACTGAAAT CATTATCTGG ACACAAATAT TTAATCAAAT 
ATTATGATGC ATGTGAGGAC GCCAATAACG TATACATAGT CATGGAGTTG 
TGTGATGGTG GAGAACTTTT GGACAGAATT TTAGCAAGGG GTGGTAAATA 
CCCGGAGGAT GATGCAAAGG CGATTGTCGT ACAAATTCTA ACTGTTGTTT 
CATTTTGTCA TCTCCAAGGA GTTGTGCACC GTGACTTAAA GCCAGAGAAT 
TTTCTATTTA CATCAAGCCG CGAAGACTCA GACTTGAAAC TTATTGATTT 
TGGTCTCTCA GACTTTATTA GACCTGATGA AAGACTGAAT GATATAGTTG 
GAAGTGCCTA CTATGTCGCG CCTGAAGTTT TACACAGGTC ATATAGCCTT 
GAGGCTGATA TATGGAGTAT TGGAGTTATT ACATATATAC TCTTATGTGG 
AAGCCGACCT TTTTGGGCAC GGACAGAATC TGGAATCTTT CGCACTGTAC 
TAAGAACTGA ACCAAACTAT GATGACGTAC CTTGGCCTTC TTGTTCATCA 
GAAGGTAAAG ATTTTGTGAA ACGACTTCTC AACAAAGACT ATAGGAAGCG 
AATGTCTGCA GTTCAAGCTT TGACTCATCC GTGGTTACGG GATGATAGTC 
GTGTGATTCC TTTAGACATT TTGATCTATA AGTTGGTCAA AGCCTACTTG 
CACGCGACAC CTCTTAGACG AGCTGCTTTA AAGGCGCTAG CAAAAGCATT 
GACCGAGAAC GAGCTAGTCT ATCTTAGAGC ACAGTTCATG CTGTTGGGAC 
CAAACAAAGA TGGTAGCGTC TCTCTCGAAA ACTTCAAGAC GGCGCTTATG 
CAAAACGCAA CAGACGCAAT GAGAGAATCA AGAGTTCCTG AAATACTTCA 
CACTATGGAA TCTCTAGCGT ATAGGAAGAT GTATTTCGAA GAGTTCTGTG 
CAGCAGCAAT TAGCATCCAT CAACTAGAAG CTGTTGACGC GTGGGAAGAG 
ATAGCAACGG CAGGTTTCCA GCATTTTGAA ACCGAGGGAA ACCGAGTGAT 
CACAATCGAA GAACTAGCAA GGGAACTGAA TGTGGGTGCG TCTGCGTATG 
GACACTTGAG AGATTGGGTA AGAAGCAGTG ACGGGAAGCT GAGTTACTTA 
GGGTTCACTA AGTTCTTGCA CGGAGTTACT CTTCGTGCTG CTCACGCAAG 
ACCTCGCTAG TCCTTCTCTA ATTTTAGGTC TTTTTCTTAA TATTTTTTTT 
CTTCATCAGA ACAGAGCAAA TAGACTTCTG AGAGAGGTGA GGGGTATTTT 
CGTCCGTTTG TTTTGTTCTT TATCGTATTA TAGAGTTTCA ATTTTATGGT 
ACAGAAAAGA CCAAAATGAA AAAAAGATAT AAACATGTGC ATAAGGTAGA 
TGGGTTACAG TC

Gene models with high sequence identity

  1. AT2G46700.1 [+] show detail - CDPK-related kinase 3
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 1e-83
superfamily EF-hand 3.4e-21
ProfileScan Protein kinase, catalytic domain 48.838
ProfileScan EF-HAND 2 8.572
ProfileScan EF-HAND 2 5.754
HMMSmart Serine/threonine-protein kinase domain 7.6e-98
HMMSmart Tyrosine-protein kinase, catalytic domain 7.3e-12
HMMPanther Calcium-dependent protein kinase 2.2e-196
HMMPanther Calcium/calmodulin-dependent protein kinase-like 2.2e-196
HMMPfam Serine/threonine-protein kinase-like domain 1.7e-65
Gene3D no description 6.2e-18
Gene3D no description 4.2e-57

See the detailed result >

AT2G46700.1

Model type
Protein coding
Short Description
CDPK-related kinase 3
Computational Description
CDPK-related kinase 3 (CRK3); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT5G24430.1); Has 116104 Blast hits to 114484 proteins in 3071 species: Archae - 147; Bacteria - 14534; Metazoa - 42529; Fungi - 12635; Plants - 24936; Viruses - 621; Other Eukaryotes - 20702 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-K07 introduced

  • F16830 - Specific phenotypes were NOT observed.
  • F24045 - Specific phenotypes were NOT observed.
  • F29708 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found