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RAFL09-50-L05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06465)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-L05 - full reading 
AAGATTTATA TTCCTCTTAA AAAATAATTT ATTTCCTTCC TAAGAAGAAT 
TATTAGATTT ATTTTCTTTG CTAGTATAGA TTGATGAAAG TGAGGAAATG 
GGAGAAGAAA TGAAGAACAC AGGATGTGTC TTCTTCTTCT AAGTCACTAA 
CAAAATCAAC AAAGAGGAGA AGCCATTATT ATATAATAGA GAGATTGAGA 
GAAGAGATTT ATCCAAAAAA ATATTGCAAT TCTTCTTGGA GTGAATAATG 
CCAGTCCCTC TTGCACCATA TCCAACACCT CCGGCACCGG CACTGGCTCC 
GTCGTACAAC ACTCCTCCGG CAAATGGAAG TACAAGTGGG CAGAGCCAGT 
TAGTGTGTTC AGGTTGCAGA AACCTTCTGA TGTATCCCGT CGGAGCAACC 
TCCGTCTGTT GCGCCGTCTG TAACGCCGTC ACGGCCGTTC CTCCGCCCGG 
AACGGAGATG GCACAGTTGG TATGTGGAGG ATGTCATACA CTCTTAATGT 
ACATTCGTGG AGCTACAAGT GTTCAATGTT CTTGTTGTCA CACTGTTAAT 
CTCGCCCTCG AAGCAAACCA AGTAGCGCAT GTGAATTGCG GAAACTGCAT 
GATGCTACTA ATGTATCAAT ATGGAGCAAG ATCAGTGAAA TGTGCCGTTT 
GTAACTTTGT CACATCTGTT GGGGGTTCAA CGAGCACGAC TGATTCGAAG 
TTTAACAATT AAAACTTGGA TCTATCTACC TATCAATACA TATTGAGTTA 
TGAGCAATAT AGAGGAAGCA TCAAATCTTT TTCACTCTCT CTTCGATCAA 
GAATCCGGCA GTGATGAGTT TGAAACCATT TTCGGAAGTA AATGAAATAT 
GTAATTCGTC GAAATTTCTG ACTTTGGTCT CTTTGTCCGT TTGTATAGAG 
CTATCTCTCT TCTTTGGTTT TTGTTTTGTT CTCTTAAGAA AAATTTGATT 
CACCAGTTTG TAAGAGTGAT TCAGAAATCA AAGCTAGACT TTTTATGCAT 
G

Gene models with high sequence identity

  1. AT1G32540.2 [+] show detail - lsd one like 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Zinc finger, LSD1-type 1.2e-09
HMMTigr Zinc finger, LSD1-type 3.7e-11
HMMTigr Zinc finger, LSD1-type 1e-07
HMMPfam Zinc finger, LSD1-type 3e-12
HMMPfam Zinc finger, LSD1-type 2.4e-12
HMMPfam Zinc finger, LSD1-type 2.8e-10

See the detailed result >

AT1G32540.2

Model type
Protein coding
Short Description
lsd one like 1
Curator Summary
Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.
Computational Description
lsd one like 1 (LOL1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LSD1 zinc finger family protein (TAIR:AT4G20380.7); Has 253 Blast hits to 202 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-L05 introduced

  • F08325 - Specific phenotypes were NOT observed.
  • F21502 - Specific phenotypes were NOT observed.
  • F22848 - Specific phenotypes were NOT observed.
  • F29309 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / stem::decreased thickness / cauline leaf::desaturated green

Mutant lines with disrupted or induced

8 mutant lines found