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  3. RAFL09-50-P13

RAFL09-50-P13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06471)

full reading [+] show sequence

Nucleotide sequence: RAFL09-50-P13 - full reading 
AAAAGAAGCA GTTAGATTGT GACGGAGGAG ACAAAATCAT CATCTCTGTT 
CTTCTTCTTC TCCTCTCTCA CATACGATGA TGACCCAACA ACCTTGACGT 
TGATTTCGAT GTCACACACA ACACTATAAA TAACACTCTT CACCTATTTT 
TGTCATCTCA CACTTTGGAC TTTGGAGCCC AAAATAATCT CATAACCATT 
AAAAACAAAT CTCCTCCTTC TCTCCGGCGT CAATGGAGGA TCTCCGTCGT 
AGATTTCCGA CTAAAAAGAA CGGAGAAGAA ATCTCTAATG TCGCCGTCGA 
TCCTCCTCTT CGTAAAGCCT CTGACGCGCT TCCTCTTCCG TTATACCTAA 
CCAACACTTT TTTCCTCTCG CTCTTCTTCG CTACTGTTTA TTTTCTTCTT 
AGCCGATGGC GTGAGAAGAT CCGTAACTCG ACGCCTCTTC ACGTCGTTGA 
CTTATCTGAG ATCTGTGCTC TAATCGGTTT CGTTGCTTCG TTTATCTACC 
TCCTTGGTTT CTGTGGTATT GATCTCATTT TCCGATCTTC TTCCGATGAT 
GATGTTTGGG TTAACGATGG GATGATTCCA TGTAATCAAT CCCTAGATTG 
TCGTGAGGTT CTTCCGATTA AACCTAATTC CGTCGATCCT CCTCGGGAAT 
CGGAGCTTGA TTCGGTGGAA GATGAAGAAA TCGTTAAATT AGTGATCGAC 
GGAACCATCC CTTCGTACTC ATTGGAGACG AAACTCGGAG ATTGTAAAAG 
AGCAGCAGCG ATTAGAAGAG AAGCGGTTCA GAGGATAACC GGTAAATCCT 
TAACCGGTCT TCCATTGGAA GGTTTCGATT ACAATTCAAT TTTGGGGCAA 
TGCTGTGAGA TGCCAGTTGG GTATGTTCAG ATCCCAGTGG GGATTGCAGG 
ACCTTTGTTG CTTGATGGGG TTGAGTATTC AGTGCCAATG GCTACAACAG 
AAGGTTGTTT GGTTGCTAGT ACCAATAGAG GTTTTAAAGC TATACACTTG 
TCTGGTGGTG CTTTTAGTGT TCTTGTGAAA GATGCCATGA CTAGAGCTCC 
AGTTGTTAGA TTCCCTTCTG CAAGAAGAGC TGCTCTTGTC ATGTTTTATC 
TTCAAGATCC TTCTAATTTC GAGAGATTGT CTCTCATTTT CAACAAATCG 
AGTAGATTTG CTAGGCTTCA GAGTATTACA TGCACGATTG CTGGGAGGAA 
TCTGTATCCG AGGTTTGCGT GTAGTACTGG TGATGCTATG GGGATGAACA 
TGGTCTCAAA AGGTGTTCAG AATGTCTTGG ACTTTGTAAA GAGCGAGTTT 
CCTGACATGG ATGTTATTGG CATCTCTGGG AACTACTGTT CGGACAAGAA 
GGCTTCGGCT GTAAACTGGA TCGAAGGACG TGGTAAGCAT GTTGTATGTG 
AAGCTTTTAT TAAGGCTGAG ATTGTGGAGA AAGTGTTGAA GACTAGCGTT 
GAGGCTCTTG TAGAGCTTAA CACGCTCAAG AATCTTGTTG GTTCAGCCAT 
GGCGGGTTCT CTTGGTGGGT TCAATGCTCA TTCAAGCAAT ATTGTCAGCG 
CTGTGTTCAT CGCCACTGGC CAAGACCCAG CTCAAAACGT GGAGAGCTCA 
CACTGTATGA CCATGATTCT TCCCGATGGT GACGACCTTC ACATCTCTGT 
TTCAATGCCT TGCATTGAGG TTGGTACTGT TGGAGGTGGG ACACAACTTG 
CATCACAAGC AGCTTGTTTG AATCTACTCG GTGTGAAAGG ATCAAACAAC 
GAGAAACCTG GCTCGAACGC ACAGCAATTG GCAAGAATAG TGGCTGGTTC 
GGTTCTTGCA GGAGAGCTTT CACTAATGTC TGCTATTGCA GCTGGACAGC 
TTGTGAAGAG TCACATGAAA TACAACAGAT CCAGCAGAGA CATTGGCCCT 
TCGTCTCAAG TCAACAGGTG ATGTTTGGAG CACGATGAGA CGGATAATAA 
TAAAACAACA AAAACCCATA ATTAGATTTG ATGTAATTCT AACTTCATTT 
GATTTCTTCT TCATCGATCT CTTTTCTTTT CTATCTATTT TGTACTAAGT 
CTCCAAATTT TCTTAATTTA TGTAAAGTCT TTTGTCCTTC G

Gene models with high sequence identity

  1. AT2G17370.1 [+] show detail - 3-hydroxy-3-methylglutaryl-CoA reductase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Hydroxymethylglutaryl-CoA reductase, class I, catalytic 2.3e-203
Gene3D Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 9.8e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
FPrintScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 1.1e-83
superfamily Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding 8.7e-101
superfamily Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding 4e-55
HMMPfam Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 8.8e-158
ProfileScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 135.581
HMMPanther Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 0
PatternScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 0
PatternScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 0
PatternScan Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic 0

See the detailed result >

AT2G17370.1

Model type
Protein coding
Short Description
3-hydroxy-3-methylglutaryl-CoA reductase 2
Curator Summary
Encodes a 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) that is involved in the synthesis of sterol and triterpenoid compounds.
Computational Description
3-hydroxy-3-methylglutaryl-CoA reductase 2 (HMG2); CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-CoA reductase, class I, catalytic (InterPro:IPR004554), Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding (InterPro:IPR009029), Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding (InterPro:IPR009023), Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic (InterPro:IPR002202); BEST Arabidopsis thaliana protein match is: hydroxy methylglutaryl CoA reductase 1 (TAIR:AT1G76490.1); Has 2106 Blast hits to 2105 proteins in 886 species: Archae - 203; Bacteria - 937; Metazoa - 224; Fungi - 225; Plants - 261; Viruses - 1; Other Eukaryotes - 255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-50-P13 introduced

  • F03444 - seed::increased size / seed::increased length
  • F11128 - Specific phenotypes were NOT observed.
  • F23208 - rosette leaf::decreased size / stem::decreased thickness / fruit::decreased length / stem::abnormal / stem::abnormal
  • F29943 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found