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RAFL09-51-D07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06496)

full reading [+] show sequence

Nucleotide sequence: RAFL09-51-D07 - full reading 
ATCACCACAT GCGACACACC AACACCAATG TCTGCTTCTT CTTTATTTAA 
TCTCCCATTG ATTCGCCTCA GATCTCTCGC TCTTTCGTCT TCTTTTTCTT 
CTTTCCGATT TGCCCATCGT CCTCTGTCAT CGATTTCACC GAGAAAGTTA 
CCGAATTTTC GTGCTTTCTC TGGTACCGCT ATGACAGATA CTAAAGATGC 
TGGTATGGAT GCTGTTCAGA GACGTCTCAT GTTTGAGGAT GAATGCATTC 
TTGTTGATGA AACTGATCGT GTTGTGGGGC ATGACAGCAA GTATAATTGT 
CATCTGATGG AAAATATTGA AGCCAAGAAT TTGCTGCACA GGGCTTTTAG 
TGTATTTTTA TTCAACTCGA AGTATGAGTT GCTTCTCCAG CAAAGGTCAA 
ACACAAAGGT TACGTTCCCT CTAGTGTGGA CTAACACTTG TTGCAGCCAT 
CCTCTTTACC GTGAATCAGA GCTTATCCAG GACAATGCAC TAGGTGTGAG 
GAATGCTGCA CAAAGAAAGC TTCTCGATGA GCTTGGTATT GTAGCTGAAG 
ATGTACCAGT CGATGAGTTC ACTCCCTTGG GACGTATGCT GTACAAGGCT 
CCTTCTGATG GCAAATGGGG AGAGCATGAA CTTGATTACT TGCTCTTCAT 
CGTGCGAGAC GTGAAGGTTC AACCAAACCC AGATGAAGTA GCTGAGATCA 
AGTATGTGAG CCGGGAAGAG CTGAAGGAGC TGGTGAAGAA AGCAGATGCA 
GGTGAGGAAG GTTTGAAACT GTCACCATGG TTCAGATTGG TGGTGGACAA 
TTTCTTGATG AAGTGGTGGG ATCATGTTGA GAAAGGAACT TTGGTTGAAG 
CTATAGACAT GAAAACCATC CACAAACTCT GAACATCTTT TTTTAAAGTT 
TTTAAATCAA TCAACTTTCT CTTCATCATT TTTATCTTTT CGATGATAAT 
AATTTGGGAT ATGTGAGACA CTTACAAAAC TTCCAAGCAC CTCAGGCAAT 
AATAAAGTTT TCGTTTTTAT CT

Gene models with high sequence identity

  1. AT3G02780.1 [+] show detail - isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily NUDIX hydrolase domain-like 9.3e-37
Gene3D NUDIX hydrolase domain 4.8e-48
HMMPfam NUDIX hydrolase domain 2.2e-27
HMMPIR Isopentenyl-diphosphate delta-isomerase, type 1 5e-128
HMMPanther Isopentenyl-diphosphate delta-isomerase, type 1 4.4e-127
HMMTigr Isopentenyl-diphosphate delta-isomerase, type 1 3e-104

See the detailed result >

AT3G02780.1

Model type
Protein coding
Short Description
isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
Curator Summary
Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.
Computational Description
isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, flower development, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl diphosphate isomerase 1 (TAIR:AT5G16440.1); Has 2187 Blast hits to 2186 proteins in 784 species: Archae - 35; Bacteria - 1163; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-51-D07 introduced

  • F06915 - Specific phenotypes were NOT observed.
  • F09106 - seed::increased size / seed::increased length
  • F09531 - Specific phenotypes were NOT observed.
  • F17017 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found