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  3. RAFL09-55-E04

RAFL09-55-E04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17760)

full reading [+] show sequence

Nucleotide sequence: RAFL09-55-E04 - full reading 
CCGACATTCG CGAGATTAAA GTTTTCTAGT TATCAGAAAA AAACGAAACC 
TTTCTCAGAT TGAAATCGAA AGCACGGATC TTTCTTCATA CCTCAAACCT 
GCAGGATCCA TTCATGATTT TGGAGATCTG TTTATCAAAT CTCAGATCAG 
AAGCTTCTAC GAGTTGATTA TATGCTGTGT TTGCAGATCT GGGTTTGGTT 
ATATTTCTGA GTAAATCTCT CACCCAACAC CATGTGTGAT CAAAGACCAA 
ATCTTTTAGG GTCTCTCGTG TTGTTGGGTT TCTTCATCTT CTTTGTAAAT 
GGAGAAGAAT GCTCTAATTC GAGCTCATTG ATTGGGCATG AGTCTGAGTT 
CAAGATGTTG CAACATCAGC TTCGTGGGGT TTTCACTGTT GTCGATGATT 
GTTCGTTTAG GGTTTCTCGT TTTGATATGC TCTCTGGTTC CGAGGTTCAT 
TGGTGGGGTG CTATGTCTTC TGATTTTGAT AATATGACTA ATGATGGCTT 
TGTTATCTCT GATCAGAAGC TTAATCAAAC ATTCAAAAAC TCATCTTTTA 
TTGTTCGGTT GTTGGGTAAT GTTACTTGGG ATAAGTTAGG TGTGGTTTCG 
GTTTGGGACT TACCTACTGC TTCTGATTTT GGGCATGTTC TACTCTCTAA 
TGCGACGGAA TCAGATACTT CAAAAGCTGA ATCTCCTCCT TCAGAGAGCA 
ATGATGTTGC TCCAGGGAAA TCGAATAACA GTGAGCCTTT TAAGGCTCCT 
ACTATGTTTG ATAATTGTAA GAAACTTTCG GATAAGTATA GGCTTAGGTG 
GAGCTTGAAT GCAGAGAAAG GTTATGTTGA TATTGGTTTA GAGGCTACTA 
CTGGTTTATT GAACTACATG GCGTTTGGTT GGGCTAAACC GAATTCTACA 
TCGAACTTGA TGTTGAATGC TGATGTTGTG GTTACTGGGA TTAGAGAGGA 
TGGCTTCCCG TTTGCTGATG ATTTTTATAT CACGGAGTCT AGTGTGTGTT 
CTGTGAAGGA AGGTACAGCT ACTGGGGTTT GTCCTGATAC TGTGTATGAA 
GAGGCAGATT CAGTTGGTTC TTCGGTGAAT AATACAAAAC TGGTTTACGG 
GCATAGGATA GATGGAGTTT CGTTTGTTAG GTATAGGAGA CCGTTGAATG 
ATAGTGATAA TAAGTTTGAT TTTCCTGTGA ATTCAACTGA AAGCCTGACA 
GTTATTTGGG CACTTGGGGT GATAAAACCC CCAGATGTTA TTAATCCTTA 
CTATCTCCCT GTGAATCATG GCGGTGTGGA ATCAGAAAAC TTTGGACATT 
TTTCGCTTAA TCTTTCGGAT CATGTGGATG AATGTTTGGG ACCATTGGAT 
GCAGACAACA AGTATGATCA AGATGTGATC ATTGCTGATG CCCACGCGCC 
TCTTGTTGTC ACGGCTGGAC CTTCTGTGCA TTATCCGAAC CCTCCTAATC 
CTTCAAAGGT TCTGTATATT AACAAGAAAG AAGCGCCGGT ATTGAAAGTG 
GAAAGAGGGG TTCCTGTGAA GTTTTCAATA GAAGCAGGAC ACGACGTTTC 
TTTCTACATA ACTTCAGATT TTCTTGGTGG GAATGCTTCT CTAAGGAACA 
GAACTGAGAC AATCTATGCG GGTGGGCAAG AAACTCATGG AGTACTATCG 
AGTCCGTCAG AGCTGGTTTG GGCTCCTAAT AGAAATACAC CTGACCAACT 
GTATTATCAC TCGATTTTTC AAGAGAAAAT GGGTTGGAAG GTTCAGGTTG 
TTGACGGGGG ACTTTCAGAT ATGTACAACA ACAGTGTTAA TCTAGATGAT 
CAGCAAGTTA AGTTCTTTTG GACCATAGTA GGGGATTCAA TATCGATTGC 
GGCTCGTGGT GAGAAGAAAA GTGGCTATCT TGCAATTGGT TTTGGTAGCG 
AAATGACAAA CAGTTATGCT TATATTGGTT GGTTTGATAG AAATGGAACA 
GGGCATGTAA ATACTTACTG GATCGATGGA GAATCCGCTT CCGCTGTGCA 
TCCTACAACC GAAAATATGA CATACGTGAG ATGCAAATCC GAAGAGGGAA 
TCATCACACT GGAATTTACC CGTCCTTTAA AACCATCATG CAGTCATCGA 
GATAGACCAG AATGTAAGAA TATGATTGAT CCCACAACTC CTCTTAAAGT 
GATATGGGCA ATGGGTGCTA AATGGACAGA TGGTCAGTTG ACTGAGAGAA 
ACATGCACTC GGTTACAAGT CAGAGACCTG TCCGTGTAAT GTTAACACGT 
GGATCCGCAG AAGCAGATCA AGATCTAAGA CCGGTCCTGG GGGTTCATGG 
ATTTATGATG TTCCTTGCTT GGGGAATTCT GCTTCCAGGT GGAATATTAT 
CCGCTAGATA CCTGAAACAC ATAAAAGGTG ATGGCTGGTT CAAGATTCAT 
ATGTATCTTC AATGTTCTGG ACTAGCCATT GTCTTCCTAG GCCTCCTCTT 
CGCAGTAGCT GAGCTCAACG GTTTCAGCTT CAGTTCAACC CACGTAAAGT 
TCGGTTTCAC AGCCATAGTT TTAGCTTGCG CTCAGCCCGT GAACGCTTGG 
CTAAGACCTG CGAAACCTGC TCAAGGAGAA TTAATCTCTT CGAAGCGGTT 
AATCTGGGAG TATTCTCATT CGATTGTCGG TCAATCAGCT GTTGTAGTTG 
GAGTTGTGGC GCTTTTCACG GGAATGAAAC ATCTGGGAGA AAGGAATGGA 
ACTGAGAACG TGGACGGGCT TAACTTGGCC CTCGGGTTAT GGGTCTTCCT 
CTGTGTGGTT ACTGTTGCGT ATTTGGAGTA CCGGGAAAGA GGAAGAAGAA 
GAGCGAGGAA TCTAAGCAGA GGAAATTGGG TTTTGGGGAA TGTGGAAGAA 
GATGATTCCA TTGATCTAAT AGACTCAAGA GGAGGTTTCA GAGATAAAGA 
TGATGAAGAT AGAAATGGAG GGAGGATGGA AATTCAGTTA GAGCCGTTGA 
AATAATAGTA ACTTTTTTTT TCAGATTCTT TTTTTTTGTT TATGTTTTTT 
TTTTTCTTCA TTACCGAACA AGAAAAACAC ACGAGAGGAG TTTTGTCTTT 
TACTTATAAA ATGCAACGGT CGATATATTG TATCTATGCA TTAGAATTGT 
ATACTTTTGA GAATTTGAGT TTTATATATA CTACACAACC AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G54830.1 [+] show detail - DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein
    E-value: 0; Score: 99.97

 

InterPro Scan Digest

Program Description E-value
ProfileScan DOMON related 20.266
ProfileScan DOMON related 20.656
ProfileScan Cytochrome b561/ferric reductase transmembrane 29.603
HMMPanther FAMILY NOT NAMED 0.00026
HMMSmart Domain of unknown function DM13, Skeletor 4.4e-46
HMMSmart DOMON related 1e-39
HMMSmart DOMON related 2.2e-36
HMMSmart Cytochrome b561/ferric reductase transmembrane 3e-41
HMMPfam DOMON 3.2e-14
HMMPfam DOMON 9.3e-29
HMMPfam Electron transfer DM13 9.3e-13
HMMPfam Cytochrom_B561 1.8e-06

See the detailed result >

AT5G54830.1

Model type
Protein coding
Short Description
DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein
Computational Description
DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein; FUNCTIONS IN: dopamine beta-monooxygenase activity, monooxygenase activity; INVOLVED IN: histidine catabolic process, metabolic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Electron transfer DM13 (InterPro:IPR019545), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593), DOMON (InterPro:IPR013050); BEST Arabidopsis thaliana protein match is: Cytochrome b561/ferric reductase transmembrane with DOMON related domain (TAIR:AT3G61750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-55-E04 introduced

  • F09216 - Specific phenotypes were NOT observed.
  • F19041 - rosette leaf::increased size / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found