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  3. RAFL09-55-J10

RAFL09-55-J10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08451)

full reading [+] show sequence

Nucleotide sequence: RAFL09-55-J10 - full reading 
TTCTAATCGA GAGATCAGAC GCGGCGGAGA CTGGCGGAGA TGATGAATTC 
ATAAATTCCT TCTTCTCCTT TCCTCTCTTT TCATTTGATT GGCTTCTTAC 
ACAGCTTCGT CATCATGTCT TGTCCTATCC ATCCTAGGCG TCTCTTCCTC 
TGCTTGCTTA TTTCTCTCAC TTTCTTCGTC GTCGACCCTT CATCGCAGCA 
TATCGAGGTC AAGAAGAAAC AAATGCGAGA GAAAGTACGC GAGATGTTCT 
ATCATGCGTA TGACAATTAC ATGACTTATG CATTTCCGCA TGATGAGCTA 
AAGCCTCTAA CTAAAAGTTT CACAGACTCC CTCAGTGAGC TTGGAAATCT 
TAAGCTTGAA CACCTGCCAA CAGATTATAA TGGATCAGCT GTTACTCTTG 
TTGAATCATT ATCCAGCCTT GCTATATTGG GGAACAGTAC AGAATTTGAA 
AAGGGGGTTC TCTGGCTCTC AGAAAATCTT ACTTTCGATA TTGATGCCCG 
GGTCAACCTT TTTGAGTGCA ATATAAGAGT TCTTGGAGGA CTTATCTCTG 
CTCATCTTCT TGCAATTGAT CCAAATAATA GGTTGATTCA GGGTTCCTAC 
AACAATCAGC TTCTTCGATT AGCTGAAGAC CTTGGAAAAC GTTTTTTACC 
CGCGTTTGAA ACACCTACAG GATTACCATA TGCATGGATT AATTTGAAGA 
ATGGAGTAAT GGAGAATGAG ACAACTGAAA CAAGCACTTC AGGATGTGGT 
TCTCTCGTTC TTGAAATGGG AGCATTGTCA CGGCTCACTG GTGACCCGAG 
GTTTGAATCA GCTGCACTAC GTGCGCTTCG TCAGCTATGG AGGATGCGAA 
GTTCGTTAGA TCTGCTTGGG ACAACATTGG ATGTGGTAAC TGGGGAATGG 
ATAGAGTACT CCTCTAGCAT TGGAGCTGGT ATATTGTTCA TTCAGAGGGA 
TTCTAGTGGC AGTTCTTGTT CCGAAGAGAT AGCAAAATAA TTTTACTTAT 
ATGTGTGGAA TTAACTTGTG CCTTAGATTG ATGTAGCTCT GATGTGTAAT 
TTCATTTCTG GTCTTTTAAA GGGGTTGACT CTTTCTATGA ATACCTCTTG 
AAGGCTTATA TTCTTTTTGG AAAAGAAGAC TACTGGCGAA TGTTTCATTC 
TGCTTATCTG GCATCTCAGA AGTACTTCAG ACATGGGCCT TGGTAATATA 
CTAGCCTGAA AAAATGTACC ATGAAGCTAA TATGTGGAGT GGAAAACCAA 
CTTACTGGCA GCTCACAAGT CTTCAGGCGT TTTGGCCTGG TCTGCAGGTT 
CTTGTTGGAG ATATTGCAGC TGCAAATTCA TCGCATCGTG AGTTTTTCCA 
TGTATGGGAA AAGTTTGGTG TATTACCTGA GAGGTATCTA CTCGATCATC 
AAATAATACA TCCGACAATG AAGTACTATC CACTACGTCC TGAATTAGCA 
GAATCCACGT TCTACCTTTA CCAAGCTACA AAAGATCCAT GGTATCTAGA 
TGTTGGTGAA TCAATGGTAA AATCTCTTAA TCTCTACACA AAGGTGCCAG 
GGGGATTTGC AAGTGTTAGA GATGTGACGA CCATGCAATT GGAAGATCAT 
CAGCACAGTT TCTTTCTCGC TGAAACGTGC AAGTACCTAT ATCTCCTCTT 
CGATGACTCA TTTGTGGCCA AAAGGAATTA TATATTTACA ACCGAGGGCC 
ATCCTATACA GGTTGTGAGC TCCTGGCATG AGAAACTACC AGAAACTTAT 
TTCTCAGGCA ACTGGACCCT TTCAAAGAGT GGAGCATGGG AAAGTCGAGC 
TAGCGCATTG TCACTACAAG TCTGTCCACT GATATCTCTT AACTCTAGAC 
ATCCTGAGCA ACAAAGAGAG AGTGCTTGCC ATGTTCTTGA CGAGCAAATC 
AATCATAAGT GTTGGAGCAA CAAAGAGTGC GGAGTTGATG CCACTACTTG 
TAGACTAAGA ACCTGCAGCG GGGTTGGATA CTGCGGCTTA TGGAATCCCT 
TATAACTTTT GACACAAAAC AGTGGGGTCT TGGGTTTTAA TAAAGGAAAG 
AGAAGAGGTG GAGTTTACGA ACTGAAACTG TAAATTAATG CGAAATGACA 
AGTTTTGGTA GACAGAAAAT GGATAGTTGT TGCATGAGGC TGTTGTATCT 
TTTTCTTTGA TTCATCAGTC CTGACATGGA TATATAGTTA TATACTATGG 
GAGGATCAAC CTCGATCAAA GGAATATTAT GTTTTTCTTG TTTTTTTCTT 
GACGTATAGC TTTATGCCTT TATCAAATGG TAATTCTAGG ACCTTAACAG 
ATAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT1G27520.1 [+] show detail - Glycosyl hydrolase family 47 protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glycoside hydrolase, family 47 1.9e-63
HMMPfam Glycoside hydrolase, family 47 9.2e-48
FPrintScan Glycoside hydrolase, family 47 2.7e-26
FPrintScan Glycoside hydrolase, family 47 2.7e-26
FPrintScan Glycoside hydrolase, family 47 2.7e-26
FPrintScan Glycoside hydrolase, family 47 1.6e-18
FPrintScan Glycoside hydrolase, family 47 1.6e-18
FPrintScan Glycoside hydrolase, family 47 1.6e-18
HMMPanther MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDAS 5.5e-118
HMMPanther Glycoside hydrolase, family 47 5.5e-118
HMMPanther MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDAS 5e-85
HMMPanther Glycoside hydrolase, family 47 5e-85
Gene3D Glycoside hydrolase, family 47 1.8e-69
Gene3D Glycoside hydrolase, family 47 3.1e-49
superfamily Glycoside hydrolase, family 47 3.5e-70
superfamily Glycoside hydrolase, family 47 7.9e-49

See the detailed result >

AT1G27520.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 47 protein
Computational Description
Glycosyl hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 47 protein (TAIR:AT5G43710.1); Has 2179 Blast hits to 1853 proteins in 199 species: Archae - 0; Bacteria - 11; Metazoa - 788; Fungi - 990; Plants - 198; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-55-J10 introduced

  • F12714 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found