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RAFL09-57-G18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08465)

full reading [+] show sequence

Nucleotide sequence: RAFL09-57-G18 - full reading 
ACATTGAAAA GGCTTCAACG ATGTTTCTAA ATTACCTGAC TTGGAAGAGA 
AGCATGCTCC CAAAGGGGCA CATACCAGAA GCAGAGATTG CAAATGATCT 
ATCGCATAAC AAGATGTGTA TGCAAGGTCA TGACAAGATG GGTCGACCTA 
TCGCTGTTGC CATTGGGAAC AGACATAACC CTTCCAAAGG CAACCCTGAC 
GAGTTCAAGC GTTTTGTTGT CTACACGCTC GAGAAGATTT GTGCTAGAAT 
GCCGAGAGGT CAAGAGAAAT TCGTAGCAAT TGGAGATCTG CAAGGCTGGG 
GATATTCTAA TTGTGACATC CGTGGCTACC TTGCTGCTCT TTCCACTTTG 
CAGGATTGTT ACCCAGAGAG ATTAGGGAAA CTCTATATAG TTCATGCCCC 
CTACATTTTC ATGACCGCAT GGAAGGTCAT TTATCCTTTT ATCGACGCCA 
ACACCAAGAA AAAGATTGTT TTCGTGGAGA ACAAGAAACT CACTCCAACG 
CTGCTTGAAG ACATAGACGA AAGCCAACTT CCCGACATCT ACGGAGGCAA 
ATTGCCACTT GTTCCTATTC AGGAGACCTG ATTATAGGTC TTACTACGGC 
CCACCTCTAT TTCCAAATTA TTACTTACTA GTATTATTTT TTATTTGAAT 
AAAATGAAAA ACATATTGAG TGTCGCCAAA TGCCAACAAT TATATATTTA 
CTGCCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G01630.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR10174 2.00001392772266e-116
Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 1.2000011745814e-44
HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 1.79999754022375e-49
HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 7.4e-30
HMMPanther PTHR10174:SF2 2.00001392772266e-116
ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 0
superfamily Cellular retinaldehyde-binding/triple function, C-terminal 2.4e-48

See the detailed result >

AT1G01630.1

Model type
Protein coding
Short Description
Sec14p-like phosphatidylinositol transfer family protein
Computational Description
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-57-G18 introduced

  • F03506 - seed::increased size / seed::increased length
  • F03916 - Specific phenotypes were NOT observed.
  • F04412 - Specific phenotypes were NOT observed.
  • F04434 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found