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  3. RAFL09-58-J22

RAFL09-58-J22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06555)

full reading [+] show sequence

Nucleotide sequence: RAFL09-58-J22 - full reading 
AAATTACAAT GGAGCACAGA AATGTAAGAG GGAACGGCAT AGACATCCAC 
GTAGCAATCC AAGGTCCCTC CGATGGTACT ATAGTCCTCC TCCTCCATGG 
TTTCCCTGAG CTTTGGTACT CATGGCGCCA CCAGATCTCC GGACTCGCCG 
CTCGTGGCTA CCGTGCCGTC GCTCCTGACC TACGTGGTTA CGGTGACTCC 
GATGCTCCGG CTGAGATTTC TTCCTTTACA TGCTTTAACA TAGTAGGTGA 
CTTAGTCGCC GTCATATCCA CCTTAATCAA GGAGGATAAG AAGGTGTTTG 
TGGTTGGACA TGATTGGGGA GCTCTCATCG CTTGGTACCT TTGTCTTTTT 
AGACCAGATA AAGTCAAAGC TTTGGTTAAC CTTAGTGTTC CGTTGTCTTT 
CTGGCCAACC GATCCATCGG TGAAGCCCGT TGATCGCATG CGTGCTGTAT 
ACGGCAATGA TTACTATGTC TGCAGGTTTC AGGAAGTTGG AGATATAGAA 
GCTGAGATTG CAGAGGTTGG AACAGAGAGA GTCATGAAGA GACTACTCAC 
TTATAGAACT CCTGGACCGC TTATTATACC GAAGGACAAA AGTTTTTGGG 
GATCCAAAGG CGAAACTATA CCACTACCGT CTTGGCTAAC GGAGGAAGAT 
GTTGCTTACT TCGTCAGCAA GTTTAAAGAG AAAGGCTTCT GTGGTCCAGT 
CAATTACTAC CGTAACTTCA ACAGGAACAA TGAGTTGTTG GGTCCATGGG 
TGGGAAGCAA AATCCAGGTT CCTACAAAGT TTGTGATAGG GGAGCTTGAT 
CTGGTCTACT ATATGCCTGG TGTGAAGGAA TATATACATG GTCCCCAGTT 
TAAGGAAGAT GTGCCTTTGA TTGAAGAGCC TGTGGTCATG GAAGGAGTGG 
CTCACTTTCT TAACCAAGAG AAGCCTCAAG AGATTCTCCA AATAATCCTT 
GATTTCATCT CCACATTCTA ATATTTCGTT CCCTTATAAA ACACTCTTGT 
AAGTTCCATA ATAAGTTGAA TTTTGAGGAT GTATCTTCAT GTATGGAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT2G26750.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther EPOXIDE HYDROLASE 3.2e-118
HMMPanther ALPHA/BETA HYDROLASE RELATED 3.2e-118
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan Epoxide hydrolase-like 2.8e-49
FPrintScan ABHYDROLASE 0.000017
FPrintScan ABHYDROLASE 0.000017
FPrintScan ABHYDROLASE 0.000017
superfamily alpha/beta-Hydrolases 4.8e-59
Gene3D no description 2.4e-56
HMMPfam Alpha/beta hydrolase fold-1 0.00000000000013

See the detailed result >

AT2G26750.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: soluble epoxide hydrolase (TAIR:AT2G26740.1); Has 13644 Blast hits to 13615 proteins in 1561 species: Archae - 73; Bacteria - 9500; Metazoa - 505; Fungi - 453; Plants - 528; Viruses - 3; Other Eukaryotes - 2582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-58-J22 introduced

  • F07103 - rosette leaf::desaturated green / rosette leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / cauline leaf::desaturated green / whole plant::decreased height / sporophyte vegetative stage::decreased speed
  • F07941 - Specific phenotypes were NOT observed.
  • F26213 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found