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  3. RAFL09-58-N09

RAFL09-58-N09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06558)

full reading [+] show sequence

Nucleotide sequence: RAFL09-58-N09 - full reading
ATGGTGAAAT CCAGTGCATA TATGATTATT TATCTGAGGC GAAGATTCCT 
TACTTCATCT TGATGCGACT ACTACTGGTC CAACTTTCAT TGGATCGGTT
GATTTGAGGC CGTTGTTCTT ACATTTTGGT GTCCCACCTG TTCTTTTAGT
ACTGTTTTCC TTTTTGTTTC TGGCAATCAG AAAACATAAA GGCAATCAGT
CATCCTTCTC AATAACATAC AAAGATTTGG TTTTCAAGAG AATCTTCTAT
AGAAAGCTAG ACGTTTACTT CTGTCTTATT AAGGAGAAGT ACTGGTTCTT
TCATTTATAT CTTGGCTGGT TTGGGAATTG CATCCAAATT TCTTGCAGTG
GGTGTCAGCC TGGAGCTGCA GAAAAGTGAG TTGATGTTAG AGATTGTAGG
ATCTTACTCC AAAAAGCCAG AAAAGGTCCT TGCGACTCTC TAACTTGAAA
GTTGTTTCCT TTTTTTGAAT CTGAGCTGGT TTTGGAATTT TGGTGTCAAG
ATTTGGAATT TGAATCTGTA GTAAGATTCA GGTTTAGTGG GGGAGGGAAC
AAGTTGGAAG CTTTTGCTAG TTTTGTCAAA GGTGTCACTA AAGTACTAAC
TATCAGAAAA CATTTTCAGC CAGAAGCTTG GTGATGTATC TTCAGATTTT
CAACAACCCA TCTCATGGCT TAGCTCATTT ATGCTACTCT AGTCGGGTTT
CGTGTAGGGT AAGACTGAGT CGTGTCCTTG CCATGCCACC GTCTTCAGTC
CTCTTGCATA TGGACGAAAG CAATGATCTT CCCAAGCCCA AGAAGGGTTT
TTGTCTGAGT GAAGATTCGA GAAACAGTTT AAACAGTCTT CCTGCAGATT
CTTTGCTTAG GCAGGCCAAC ACAGTGGGGA TTATCGGAGG CGTTTCAACT
GATTCCACTC TGAAATTTGT GAAGAAACTC GTGGATTGGA GCTCAAATGA
TGGTAAAAGC TCGTTACCTT TTGTGCTTTG CTCGGATCCT GCTCTCAACA
AGGAGCTTCT CTTATACGAG GAAAACTCGT ATCCTTCTCT TTACCATAGA
GAAGAGAGTA CTCCGGTTGA TCCAAAGCTA ATTGTGGAAA ATCTAAGGAA
TAAGAGGAGA TATCTTGAGA GGTGTGGAGC TAAATTAATC TTAATGCCCT
GTCATATTGC ACATATATGG TATGAAGAGG TATGTGAAGG GAGTTTAGTT
CCTCTGCTTC ACATGGGTGA ATGCATTGCT AAAGAACTGC AAGAGGCAAA
AATGAAGCCC CTTGAAGCTG GGAATCCTCT GCGTGTAGGT GTGATGGCCA
CTAGCGCCAC GTTATCAGCA GGGTTCTACC AGGAGAAACT CCAAAGCAAT
GGATTTGAGG CTGTGCTTCC AGACAAGGCA ACAATGGAGC ACACGGTGAT
CCCATCCATA GAAGCAATGA AGAGAAAAGA CATGGAAGGA GCACGGAACC
TTCTGAGGAT AGCGTTGCAG GTACTGCTAG TGCAGGCGGT AAACGTGGTG
ATGCTCGGGT CAGATGAGAT GCGGGACCTC TTGCCTGGGG ATGATCCTCT
GCTAAAGAAG TGTTGATCCA ATGGATGCAC TAGCAAGGTC TGCCATCAAA
TGGGCAGAGA ATAGATGCTC TTAAGGGAGT TTGTGTGTGT GTATATTTGT
GAATAGAAAT ATAGCTCGGC TGGGATGAAA TTATCAAGTG TAAACCAGTG
TTTGATAGAA AACTCAAAAC CAAAGTCTCA ACATGTATTG GTCAAAACAA
GTGTGAACAT CTCCAAAGCC AAAAAAGTCT GAACATGTGT TGGCTTGGAT
GCAATGTGTA ATATCCCTTA TTATTAATAC AGACAATTAT TAGTGGAATA
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G15410.1 [+] show detail - aspartate-glutamate racemase family
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily Asp/Glu racemase 2.2e-21
superfamily Asp/Glu racemase 1.5e-15
Gene3D Asp/Glu racemase 2e-18
HMMPfam Asp/Glu/hydantoin racemase 6.2e-21

See the detailed result >

AT1G15410.1

Model type
Protein coding
Short Description
aspartate-glutamate racemase family
Computational Description
aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-58-N09 introduced

  • F19745 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found