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  3. RAFL09-58-N09

RAFL09-58-N09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06558)

full reading [+] show sequence

Nucleotide sequence: RAFL09-58-N09 - full reading 
ATGGTGAAAT CCAGTGCATA TATGATTATT TATCTGAGGC GAAGATTCCT 
TACTTCATCT TGATGCGACT ACTACTGGTC CAACTTTCAT TGGATCGGTT 
GATTTGAGGC CGTTGTTCTT ACATTTTGGT GTCCCACCTG TTCTTTTAGT 
ACTGTTTTCC TTTTTGTTTC TGGCAATCAG AAAACATAAA GGCAATCAGT 
CATCCTTCTC AATAACATAC AAAGATTTGG TTTTCAAGAG AATCTTCTAT 
AGAAAGCTAG ACGTTTACTT CTGTCTTATT AAGGAGAAGT ACTGGTTCTT 
TCATTTATAT CTTGGCTGGT TTGGGAATTG CATCCAAATT TCTTGCAGTG 
GGTGTCAGCC TGGAGCTGCA GAAAAGTGAG TTGATGTTAG AGATTGTAGG 
ATCTTACTCC AAAAAGCCAG AAAAGGTCCT TGCGACTCTC TAACTTGAAA 
GTTGTTTCCT TTTTTTGAAT CTGAGCTGGT TTTGGAATTT TGGTGTCAAG 
ATTTGGAATT TGAATCTGTA GTAAGATTCA GGTTTAGTGG GGGAGGGAAC 
AAGTTGGAAG CTTTTGCTAG TTTTGTCAAA GGTGTCACTA AAGTACTAAC 
TATCAGAAAA CATTTTCAGC CAGAAGCTTG GTGATGTATC TTCAGATTTT 
CAACAACCCA TCTCATGGCT TAGCTCATTT ATGCTACTCT AGTCGGGTTT 
CGTGTAGGGT AAGACTGAGT CGTGTCCTTG CCATGCCACC GTCTTCAGTC 
CTCTTGCATA TGGACGAAAG CAATGATCTT CCCAAGCCCA AGAAGGGTTT 
TTGTCTGAGT GAAGATTCGA GAAACAGTTT AAACAGTCTT CCTGCAGATT 
CTTTGCTTAG GCAGGCCAAC ACAGTGGGGA TTATCGGAGG CGTTTCAACT 
GATTCCACTC TGAAATTTGT GAAGAAACTC GTGGATTGGA GCTCAAATGA 
TGGTAAAAGC TCGTTACCTT TTGTGCTTTG CTCGGATCCT GCTCTCAACA 
AGGAGCTTCT CTTATACGAG GAAAACTCGT ATCCTTCTCT TTACCATAGA 
GAAGAGAGTA CTCCGGTTGA TCCAAAGCTA ATTGTGGAAA ATCTAAGGAA 
TAAGAGGAGA TATCTTGAGA GGTGTGGAGC TAAATTAATC TTAATGCCCT 
GTCATATTGC ACATATATGG TATGAAGAGG TATGTGAAGG GAGTTTAGTT 
CCTCTGCTTC ACATGGGTGA ATGCATTGCT AAAGAACTGC AAGAGGCAAA 
AATGAAGCCC CTTGAAGCTG GGAATCCTCT GCGTGTAGGT GTGATGGCCA 
CTAGCGCCAC GTTATCAGCA GGGTTCTACC AGGAGAAACT CCAAAGCAAT 
GGATTTGAGG CTGTGCTTCC AGACAAGGCA ACAATGGAGC ACACGGTGAT 
CCCATCCATA GAAGCAATGA AGAGAAAAGA CATGGAAGGA GCACGGAACC 
TTCTGAGGAT AGCGTTGCAG GTACTGCTAG TGCAGGCGGT AAACGTGGTG 
ATGCTCGGGT CAGATGAGAT GCGGGACCTC TTGCCTGGGG ATGATCCTCT 
GCTAAAGAAG TGTTGATCCA ATGGATGCAC TAGCAAGGTC TGCCATCAAA 
TGGGCAGAGA ATAGATGCTC TTAAGGGAGT TTGTGTGTGT GTATATTTGT 
GAATAGAAAT ATAGCTCGGC TGGGATGAAA TTATCAAGTG TAAACCAGTG 
TTTGATAGAA AACTCAAAAC CAAAGTCTCA ACATGTATTG GTCAAAACAA 
GTGTGAACAT CTCCAAAGCC AAAAAAGTCT GAACATGTGT TGGCTTGGAT 
GCAATGTGTA ATATCCCTTA TTATTAATAC AGACAATTAT TAGTGGAATA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G15410.1 [+] show detail - aspartate-glutamate racemase family
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily Asp/Glu racemase 2.2e-21
superfamily Asp/Glu racemase 1.5e-15
Gene3D Asp/Glu racemase 2e-18
HMMPfam Asp/Glu/hydantoin racemase 6.2e-21

See the detailed result >

AT1G15410.1

Model type
Protein coding
Short Description
aspartate-glutamate racemase family
Computational Description
aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-58-N09 introduced

  • F19745 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found