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  3. RAFL09-59-A21

RAFL09-59-A21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06565)

full reading [+] show sequence

Nucleotide sequence: RAFL09-59-A21 - full reading 
AAAACCCTAA TCTCTGTACT CTCTCTTCCT CAATCCCTCC CATGACCACC 
GCAGTTTCGC CGCCGCCGCC GCAGGAGCAG CAACTTGTTC ACGCTTCGCA 
GACTTCAAGA GTGAGTCCCA AGACAGTGGA GAGCGCCCTC AATGGTCTTA 
TCAATTGGAG AAGCGACAAA TCAAAGACAG AGAAGCCTCA ACTTCTCGAA 
GAAGACGAGC TCGTCTACCT TTTCGTTACT TTGAAGAAGA TTCCACAGAA 
GACCCGTACG AATGCTTACC GTATCCCTTT ACCTCATCCT CTTATCAACC 
CGACGGTCGA TTCGCCGGAG ATTTGTCTCA TCATCGACGA CAGACCTAAA 
AGTGGTCTCA CCAAAGATGA TGCGATGAAG AAGATCAAAT CTGAGAATAT 
TCCAATCACC AAGGTTATTA AGCTTTCGAA ACTGAAGAGT GATTACAAGG 
CGTTCGAAGC GAAGAGGAAA CTCTGCGACT CTTACGACAT GTTTTTCACT 
GATCGGAGGA TCATTCCTCT GCTGCCGAGG GTGATTGGGA AGAAGTTCTT 
TACGAGCAAG AAGATTCCGG TGGCGCTTGA TTTGAAGCAC AGGAACTGGA 
AACATCAGAT AGAGAAAGCT TGTGGATCTG CTATGTTCTT CATAAGGACT 
GGGACGTGTA GTGTCATTAA GGTTGGGAAA TTGTCTATGG ATATTTGTGA 
AATTACTGAG AATGTGATGG CGACATTGAA TGGACTAGTT GAGTTCTTGC 
CTAATAAGTG GACGTACGTT AGGTCTTTGC ATTTGAAGTT GTCTGAGAGT 
TTAGCTTTGC CTATATATCA GTCTGTTCCT GATTTGAAGC TTAAAATCGA 
TGCTTTTGGG TCTGGAAAGA GTGTTGTTCA GGAGGAGAAG GAAGGTGAAG 
TTGAAGAAGT TGTTGCTGTT GATGGTGGAG AGAAGAGTGT TACAGGGAAG 
GGAAAGAAGA AGAAAGGTAG GATTCACGAG GTTAGGTATA TGGATAGTAA 
TGTAGCTGAG GTGCTTGATG AGGATGAGAT TGGTGGTGAC GAGGATAATA 
ATGAGATTGT TGAGTCTGAG GAGAAGAAGA TGAAGAAGAG GAAGAAGGAG 
GTAAGTGAAG TTGCAGAGAG TGAGAAGCCG ATGAAGAAAG CTGCCAAAGG 
GAAGTTGAAA CCTGATGTTG AGAAACCGAT GAAGAAAGCT GCCAAAGGGA 
AGTCGAAACC CGATGTTGAG AAACCTATGC AGAAAGCTGC GGTCAAGGGG 
AAAGTTAAAC CAGATGTTGT GAAGCTGGAG AAGAGCAAGG ACGGCTTAAA 
GGCGAAAAAG ACAACAATGG TTGCGAAAGA CGAATCTGGT GGTGGATTGA 
AGCCGAAGAG AAAGAGTGTG CTTAGGAAAT GAGGCAGAGG AAGGTCTTGA 
GTGTTTGCTT TTGAGTATGA TTTATGTTTT ATTTTCTATC GTAGTTCTTA 
TTACATTTTT GAGCCATTTC ATATCTTGTA CTACTTCTAT GAAACATTGA 
ACTGGTGAAT GTGGGTTTGA TGGTTTTGTG GAGGAAACAT ACTACTGTTC 
ACCTTTTAAC TTTTTAAAGG TTTTTCTTTC CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G58660.1 [+] show detail - Ribosomal protein L1p/L10e family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein L1 1.3e-46
HMMPfam Ribosomal protein L1 0.00000000000053
HMMPanther PBK1-RELATED 4.1e-94
HMMPanther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4.1e-94
Gene3D Ribosomal protein L1, 2-layer alpha/beta-sandwich 0.00015

See the detailed result >

AT3G58660.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-59-A21 introduced

  • F21936 - Specific phenotypes were NOT observed.
  • F26133 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found