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  3. RAFL09-60-N17

RAFL09-60-N17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17785)

full reading [+] show sequence

Nucleotide sequence: RAFL09-60-N17 - full reading 
GAAGACTAGA CTTTAGCTTA TCGTTCTAGA GAGAGGAAGA AGATGAGGGA 
GAATTGGGCG GTGGTGGCTC TGTTTACACT ATGCATTGTA GGGTTTGAGC 
TTAGATTCAT CCATGGAGCT ACTGATGCAT CAGACACTTC AGCATTGAAC 
ACATTGTTCA GTGGTATGCA TTCTCCAGCT CAGCTAACAC AATGGACTGC 
AGCAGCTGGT GATCCTTGTG GCCAGAATTG GAGAGGCGTC ACTTGTTCCG 
GCTCACGAGT TACTCAAATA AAGTTGTCAG GTCTTGAGCT CTCTGGAACT 
CTTGGAGGAT ACATGCTTGA TAAATTGACT TCTCTTACCG AGCTTGATCT 
AAGCAGCAAT AATCTTGGAG GTGATTTACC ATATCAGTTT CCTCCAAATC 
TGCAACGATT GAACCTTGCG AATAATCAAT TCACTGGAGC TGCTTCGTAC 
TCACTTTCTC AGATTACACC ACTTAAGTAT CTCAATCTTG GTCACAATCA 
GTTTAAGGGG CAGATAGCTA TCGACTTCTC CAAGCTCGAC TCTCTCACAA 
CCTTGGACTT CTCTTTCAAT TCTTTCACGA ACTCTTTACC GGCAACGTTT 
TCCTCTCTAA CAAGTTTAAA ATCACTATAC CTTCAGAACA ATCAGTTCTC 
AGGCACAGTC GATGTCTTAG CCGGTCTTCC TCTTGAGACT CTGAACATTG 
CGAACAATGA CTTCACGGGG TGGATCCCCA GTTCTTTAAA GGGCATCACA 
TTAATAAAAG ATGGCAACTC ATTCAATACT GGACCTGCAC CTCCACCACC 
ACCTGGTACA CCTCCTATCC GTGGCTCCCC GAGCCGTAAA TCTGGAGGAC 
GTGAAAGCCG GTCTAGTGAT GAGTCCACCA GAAATGGAGA TTCCAAGAAA 
TCAGGAATCG GAGCGGGGGC AATTGCGGGC ATAATCATTT CATTGTTAGT 
AGTTACAGCT CTTCTTGTTG CTTTCTTCTT GTTCAGAAGA AAAAAATCAA 
AGAGGTCATC ACCCATGGAC ATTGAGAAAA CCGATAACCA GCCTTTCACT 
CTTGCTTCAA ACGACTTTCA CGAAAACAAT TCCATTCAGA GTTCTTCATC 
AGTTGAGACA AAGAAACTGG ACACTTCATT GTCTATTAAT CTTCGACCTC 
CACCAATTGA TAGAAACAAA TCATTTGATG ATGAAGATTC GACAAGAAAG 
CCTATTGCTG TCAAGAAATC CACAGTGGTG GTTCCTTCAA ATGTGAGACT 
CTATTCAGTT GCAGATCTCC AAATTGCTAC TGGCAGTTTC AGCGTAGATA 
ATCTTCTTGG AGAAGGGACT TTTGGACGAG TATACAGAGC TGAGTTTGAT 
GATGGAAAGG TTCTTGCTGT GAAGAAAATT GATTCGTCTG CTCTCCCACA 
TGGCATGACC GATGATTTCA TTGAAATGGT ATCGAAAATA GCCAATTTGG 
ATCATCCAAA TGTGACCAAG CTTGTTGGTT ACTGTGCTGA GCACGGACAA 
CATCTCGTGG TCTATGAATT CCACAAAAAT GGATCATTAC ATGACTTCTT 
ACACTTATCA GAAGAGGAAA GTAAAGCATT GGTGTGGAAT TCACGAGTCA 
AGATCGCTCT TGGGACTGCA CGCGCATTGG AGTATCTGCA TGAAGTTTGC 
TCACCGTCTA TAGTGGACAA GAATATCAAA TCAGCTAATA TTTTACTCGA 
TTCAGAGCTG AATCCTCACT TATCAGATTC TGGTCTCGCA AGCTTCCTTC 
CCACAGCTAA TGAGTTATTA AACCAAACCG ATGAAGGGTA TAGCGCACCT 
GAAGTATCAA TGTCAGGCCA ATATTCTTTG AAGAGTGACA TTTACAGTTT 
TGGAGTAGTG ATGCTTGAAC TTTTAACTGG GAGAAAACCA TTTGACAGCA 
CAAGGTCAAG ATCTGAGCAG TCACTGGTTC GATGGGCGAC ACCACAACTT 
CACGACATTG ATGCTTTAGC CAAAATGGTT GATCCAGCTC TTAAAGGGCT 
TTATCCTGTC AAATCCCTTT CTCGATTTGC AGATGTTATC GCTCTCTGTG 
TCCAGCCGGA GCCGGAGTTT AGACCACCAA TGTCTGAAGT TGTGCAGGCT 
CTAGTTGTGT TAGTGCAGAG AGCTAACATG AGCAAGAGAA CTGTCGGAGT 
TGATCCATCG CAACGTGCTG GTAGTGCCGA CACGACCAGT GATTACATGT 
AAATGCCTCT ACCAAGAGAA AAGACAAACA CTTTGCTCCG TCGGATGTTA 
ATCATAGACA ATTGGAAGAT AGAAAAAAGC AACCTCATAC ATTGTATAAT 
CCCATTGTTT TATTGTAATT GTATGTTCCA AAGGTGTAGC TTCTAGATCC 
TTTACATGAA CAAAATTCTT TCTTGTAATC TTCTACATTG GTTCTATTTG 
GGCTTGGTTC AATTCTTGAT CACCAAAA

Gene models with high sequence identity

  1. AT1G53730.1 [+] show detail - STRUBBELIG-receptor family 6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 5.8e-69
superfamily L domain-like 7.9e-44
HMMPanther STRUBBELIG RECEPTOR 7.8e-230
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.8e-230
HMMPfam Serine/threonine-protein kinase-like domain 6.2e-40
HMMPfam Leucine-rich repeat 0.12
HMMPfam Leucine-rich repeat 0.15
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.4e-07
ProfileScan Protein kinase, catalytic domain 35.114
Gene3D no description 6.8e-40
Gene3D no description 5.7e-19
Gene3D no description 1.5e-40
PatternScan Protein kinase, ATP binding site 0
HMMSmart Leucine-rich repeat, typical subtype 34
HMMSmart Leucine-rich repeat, typical subtype 310
HMMSmart Leucine-rich repeat, typical subtype 15
HMMSmart Leucine-rich repeat, typical subtype 52
HMMSmart Serine/threonine-protein kinase domain 1.3e-19
HMMSmart Tyrosine-protein kinase, catalytic domain 3e-15

See the detailed result >

AT1G53730.1

Model type
Protein coding
Short Description
STRUBBELIG-receptor family 6
Computational Description
STRUBBELIG-receptor family 6 (SRF6); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 7 (TAIR:AT3G14350.1); Has 158312 Blast hits to 119064 proteins in 3476 species: Archae - 117; Bacteria - 16807; Metazoa - 46536; Fungi - 8480; Plants - 68549; Viruses - 305; Other Eukaryotes - 17518 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-60-N17 introduced

  • F10017 - Specific phenotypes were NOT observed.
  • F13021 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found