1. Home
  2. Full-length cDNAs
  3. RAFL09-60-O15

RAFL09-60-O15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09857)

full reading [+] show sequence

Nucleotide sequence: RAFL09-60-O15 - full reading 
GGGTTTCTCA GCTGAAATCA AAATGGGTAT TATCAGATTT CAAATCCTGA 
ATCCGACGAG GATTTGTAGG TCTACTATAT ATTATATGTC TTGCCGTTAT 
CTGCCATCAT CATCATCATC ATCATCACCA CTCCGAGTAT CTTCTTCTTC 
ATCGCAAAAA CCTAGTTTCG ATTTCTCCAG AAGGTGGCAT TTTGGTCACC 
CTGATCATCA CCAGCAATAT CAAAAGCCTG GAGAAGAAGG GGAGAAGATA 
TTCCGGCTAG GTCTCACCGC AGATATAGGT TTATCTGTCG CAAAAGCTCT 
CACCGGTTAT CTCTGCGGCA GCACCGCCAT TATCGCCGAT GCTGCTCATT 
CCGTTTCCGA TGTGGTTCTA AGTGGTGTTG CTCTAGTGTC TTACAGAGCT 
GCAAATGTTC CCAAGGACAA AGAACATCCT TATGGTCATG GTAAATTTGA 
AACGCTTGGA GCACTTGGCA TCTCTGCCAT GCTTTTGGCT ACTGGCTCTG 
GTATTGCCTG GCATGCTTTA GACCTTTTAT CTATTGCACT GTCCGCAGCT 
CCTGAGGTAA TTCATAGTGG ACATCATCAC GGCATTGATA TGAATCATCC 
CATTCTCGCT TTGACTGTTA CTATTGCTTC CATTTCTATC AAAGAAGGGC 
TTTATTGGAT CACAAAACGA GCAGGTGAAA AACAAGGGAG TGGTTTGATG 
ATGGCAAATG CTTGGCATCA TCGATCAGAT GCTATTTCTT CTCTAGTTGC 
ACTTGTTGGA GTTGGAGGTT CTATTCTCGG AGTTAATTTT TTAGATCCTC 
TAGCTGGCCT TGTTGTCTCG ACAATGATTG TCAATGCCGG ACTGAAAACA 
GGACACCAAA GTATCTTGGA ACTCGTGGAT GCTGCTATAC CAGCTCAGCA 
ATTAGAGCCA ATAAGACAAA CCATATTACA GGTTGAAGGA GTGAAGGGAT 
GTCATCGGCT AAGGGGTAGG AGAGCTGGTT CATCGTTGTA TCTTGATGTA 
CACATTGTGG TAGATCCTTT TTCCAGTGTG AGTGTCGCAC ATGAGGTAGG 
AGAATATGTA CGGAGACAGA TTAATTTGAA CCATCCTGAA GTGTCCGAAG 
TTTTTATTCA TATAGATCCA GCCTTTTTAC AGTTTTCTTG TAGCACCAAG 
GATCATGACA GTATAACGAA GGAAAGTAAC ATCTGCCAAG AGATTAAACA 
TGTTGAAGCC ACTGTCTCAG ACATTTTTTC GTCGCAGTTG TCTGAGAAAT 
TGACGATCAA ACGAATTACA CCCCACTTGT TACATAGCAA GATCTTGCTC 
CAAATCGTAG TCGCCATGCC ATCAACCATG TCCATACAGG ACGTCATGAT 
AGCTGCTGAA CATGCAGAGA AAGAGATTCT GAAGGCAGCC CCAAATGTGG 
CTCGTGTCAG CATTCAGCTT AGTCTTAACT CCGAATAACT TTGAAGGAAA 
TAACAAGAGA AGACCCCTCT GCAATGGCTG CAACAACTAT AATTTTTAAA 
AAAAGAAATA CAGTGCGCTA ACTATGTTCA TACTGATTGT CAATATTTTG 
TTGATATTTC TGGCTTTCTT TACACTGCTC ATCGAAGTTG TTTCTTTCTG 
ATGAGCAATT TAATCTCGAA AATTTGCAAC TTGATGATTC CAAAGCTGAG 
AAAAGTTTTG GGAATGTAA

Gene models with high sequence identity

  1. AT2G47830.1 [+] show detail - Cation efflux family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan PROKAR_LIPOPROTEIN 5
HMMPfam Cation efflux protein 1.8e-59
HMMTigr Cation efflux protein 6.7e-79
HMMPanther Cation efflux protein 4.8e-69

See the detailed result >

AT2G47830.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-60-O15 introduced

  • F16539 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found