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  3. RAFL09-61-H10

RAFL09-61-H10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08520)

full reading [+] show sequence

Nucleotide sequence: RAFL09-61-H10 - full reading 
ATCTTCTTCT TCTTCATCTA CCTAACTTAG GTTTTATCAA TCTCTCATTT 
CCAACCATGG CTTCCTCCGC CGCCCAAATT CACATCCTCG GCGGAATCGG 
ATTCCCTACT TCGTCTTCTT CCTCCTCCAC CAAAAACCTC GACAACAAAA 
CCAATTCCAT TCCACGAAGC GTCTTCTTCG GCAACAGAAC AAGTCCTTTC 
ACTACTCCAA CCTCCGCCTT CCTTCGTATG GGACGAAGAA ACAACAACGC 
TTCCCGATAC ACCGTTGGTC CAGTCCGTGT GGTTAACGAG AAAGTCGTCG 
GAATCGATTT AGGCACGACG AATTCAGCTG TTGCTGCTAT GGAAGGAGGT 
AAACCAACGA TTGTGACTAA CGCTGAAGGT CAAAGAACTA CACCTTCTGT 
TGTGGCTTAT ACTAAGAGTA AAGATAGACT TGTTGGTCAG ATTGCTAAAC 
GTCAAGCTGT TGTTAATCCG GAGAATACTT TCTTCTCTGT TAAGAGGTTT 
ATTGGTAGAA GAATGAATGA AGTTGCTGAA GAGTCTAAGC AGGTTTCTTA 
TAGAGTTATT AAAGATGAGA ATGGTAATGT TAAGCTTGAT TGTCCTGCTA 
TTGGTAAACA ATTTGCTGCT GAGGAGATTT CTGCTCAGGT TTTGAGGAAG 
CTTGTGGATG ATGCTTCGAG ATTTTTGAAT GATAAAGTAA CGAAAGCTGT 
CATCACTGTG CCTGCTTACT TCAATGATTC ACAAAGGACG GCTACTAAAG 
ATGCTGGTCG TATTGCTGGA TTGGAAGTTC TTAGGATTAT TAATGAGCCT 
ACTGCTGCTT CTTTGGCTTA TGGGTTTGAG AGGAAAAGCA ATGAAACTAT 
TCTTGTTTTT GATCTTGGTG GTGGTACTTT TGATGTCTCA GTCCTTGAGG 
TTGGTGACGG TGTTTTTGAA GTGCTTTCGA CTTCTGGTGA TACACATTTG 
GGAGGTGATG ACTTTGACAA GAGAGTCGTT GATTGGCTTG CTTCAACCTT 
CAAGAAGGAT GAAGGTATAG ATCTTCTCAA AGACAAGCAA GCGCTTCAGA 
GGTTGACGGA GGCAGCTGAA AAAGCTAAAA TTGAGCTTTC CTCACTGACT 
CAGACAAACA TGAGGTTCAC TTTTCCCTCT CAAATCTATT TACCTCGTTC 
CCATTGGTAT GTAGGATATT AACTGATTTC GATTCTGTAT CCAGTTTGCC 
TTTTATCACT GCAACGGCTG ATGGGCCTAA GCACATTGAA ACCACTCTCA 
CCAGGGGCAA GTTTGAAGAA TTGTGCTCTG ACTTACTCGA CAGGGTCAGG 
ACACCTGTGG AGAATTCCCT GAGGGATGCA AAACTCAGCT TCAAAGATAT 
TGATGAGGTG ATCCTTGTTG GTGGATCCAC ACGTATCCCT GCTGTTCAGG 
ATCTTGTAAG GAAGCTGACA GGAAAAGAAC CCAATGTCTC AGTCAATCCT 
GATGAAGTTG TAGCTTTAGG TGCTGCAGTT CAGGCCGGTG TTCTATCAGG 
AGATGTGAGT GACATTGTTC TTCTTGATGT GACGCCGCTA TCGCTTGGTT 
TGGAAACTCT TGGTGGTGTC ATGACCAAGA TCATTCCAAG AAACACCACA 
CTTCCAACTT CTAAGTCAGA AGTCTTCTCA ACTGCTGCAG ATGGACAGAC 
AAGCGTTGAG ATTAATGTGT TACAGGGTGA GAGAGAGTTC GTAAGAGATA 
ACAAGTCTAT TGGTAGCTTC CGTCTTGATG GTATTCCACC TGCACCACGT 
GGAGTTCCAC AAATCGAGGT CAAATTCGAC ATTGATGCCA ATGGAATTCT 
ATCTGTCAGT GCTTCGGACA AAGGTACAGG AAAGAAGCAG GACATCACCA 
TTACTGGTGC TAGTACCTTA CCAAAGGATG AGGTAGACAC AATGGTGCAA 
GAAGCAGAGA GGTTTGCAAA GGAAG

Gene models with high sequence identity

  1. AT5G49910.1 [+] show detail - chloroplast heat shock protein 70-2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Heat shock protein Hsp70 2.6e-43
FPrintScan Heat shock protein Hsp70 2.6e-43
FPrintScan Heat shock protein Hsp70 2.6e-43
FPrintScan Heat shock protein Hsp70 2.6e-43
FPrintScan Heat shock protein Hsp70 2.1e-32
FPrintScan Heat shock protein Hsp70 2.1e-32
FPrintScan Heat shock protein Hsp70 2.1e-32
FPrintScan Heat shock protein Hsp70 2.1e-32
FPrintScan Heat shock protein Hsp70 2.1e-32
HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 1.7e-142
HMMPanther Heat shock protein Hsp70 1.7e-142
HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 2.3e-188
HMMPanther Heat shock protein Hsp70 2.3e-188
superfamily Heat shock protein 70kD (HSP70), peptide-bind 7.7e-57
superfamily Actin-like ATPase domain 4.1e-30
superfamily Actin-like ATPase domain 1.7e-58
superfamily Actin-like ATPase domain 3.2e-31
HMMPfam Heat shock protein 70 3.3e-110
HMMPfam Heat shock protein 70 1.2e-131
HMMPfam Glutamate dehydrogenase, NAD-specific 0.000000058
HMMPfam Glutamate dehydrogenase, NAD-specific 2.5e-17
Coil coiled-coil 0
PatternScan Heat shock protein 70, conserved site 0
PatternScan Heat shock protein 70, conserved site 0
PatternScan Heat shock protein 70, conserved site 0
Gene3D no description 0.0000000034
Gene3D no description 3.2e-65
Gene3D no description 2.5e-47
Gene3D no description 0.0000000000000038

See the detailed result >

AT5G49910.1

Model type
Protein coding
Short Description
chloroplast heat shock protein 70-2
Curator Summary
Stromal heat shock protein involved in protein import into chloroplast.
Computational Description
chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-61-H10 introduced

  • F21645 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found