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RAFL09-61-P09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17786)

full reading [+] show sequence

Nucleotide sequence: RAFL09-61-P09 - full reading 
GGTTTTCTCT GCCGATTGCG GCTTCGGTCT CGTCTTCTTC AGCTGCTCCG 
TCGGTTTCAC GACGCCGGAT TTCTCCCGCC AGGTTTCTGG AATTCAGAGG 
TTTGAAGTCT TCGCGGAGTT TGGTGACTCA GTCGGCCAGT CTGGGTGCGA 
ATCGTAGAAC CAGAATCGCT CGCGGTGGAC GAATCGCCTG TGAGGCTCAG 
GACACCACTG CCGCCGCCGT CGAAGTACCA AATCTGTCTG ATTCAGAATG 
GCAAACAAAG GTTCTGGAAT CAGATGTCCC AGTTCTGGTC GAGTTCTGGG 
CACCATGGTG TGGACCTTGC CGTATGATTC ACCCCATAGT TGACCAGCTA 
GCCAAAGATT TCGCAGGGAA GTTCAAATTC TACAAAATCA ACACTGACGA 
GAGCCCAAAT ACAGCAAACC GTTACGGGAT ACGAAGCGTT CCAACAGTAA 
TCATCTTCAA AGGCGGTGAG AAGAAAGATA GCATCATTGG AGCTGTGCCT 
AGAGAGACGT TGGAGAAAAC TATAGAAAGA TTCTTGGTCG AGTAACAAAA 
TTTGACTCTT TTGTCACTCT GAACCATTTT ACCTTATCTT CTCTCTTGTA 
ATCTCTGTAA AGTCTTTTAA GTTTTTGACT ATTATGTTAT CGTGGGTCCT 
CTTTGTCTTC TTCAATAAAA AAAATGGAAA CAAAGTAAGA AAAAAA

Gene models with high sequence identity

  1. AT3G15360.1 [+] show detail - thioredoxin M-type 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Thioredoxin-like 0
superfamily Thioredoxin-like fold 1.5e-38
HMMTigr Thioredoxin 1.20000117458134e-44
HMMPfam Thioredoxin domain 5.09999999999998e-29
PatternScan Thioredoxin, conserved site 0
HMMPanther PTHR10438:SF13 1.49999648196318e-45
FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
FPrintScan Thioredoxin-like subdomain 8.29999581180007e-09
Gene3D Thioredoxin fold 1.10000150671643e-33
HMMPanther Thioredoxin, core 1.49999648196318e-45

See the detailed result >

AT3G15360.1

Model type
Protein coding
Short Description
thioredoxin M-type 4
Curator Summary
encodes a prokaryotic thioredoxin
Computational Description
thioredoxin M-type 4 (TRX-M4); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cell wall, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 22907 Blast hits to 21478 proteins in 3001 species: Archae - 325; Bacteria - 11943; Metazoa - 2959; Fungi - 1292; Plants - 2075; Viruses - 15; Other Eukaryotes - 4298 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-61-P09 introduced

  • F09431 - seed::increased size / seed::increased length
  • F16604 - Specific phenotypes were NOT observed.
  • F21851 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found