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  3. RAFL09-62-B01

RAFL09-62-B01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17788)

full reading [+] show sequence

Nucleotide sequence: RAFL09-62-B01 - full reading 
GGTGAGATCA CTACTTGTCT TCTTCGCCAG ATTATCGCCG TTCGTTCAGA 
GAAAACTTTT TCCGATACAC AAAATCGGAG GAAGAAGAAG ATGAAGCTCA 
AAGTGTATGC GGATCGAATG TCACAGCCAT CTCGTGCTGT CCTCATATTC 
TGCAAGGTTA ATGAAATCCA ATTCGATGAG ATATTGATTT ACTTGGCGAA 
TCGTCAACAA TTATCCCCTG AATTTAAAGA TATTAACCCA ATGGGGAAAG 
TTCCAGCTAT TGTTGATGGC AAACTTAAGC TCTCTGAGAG TCACGCTATC 
TTGATATATC TTTCCTCAGC ATACCCAAGT GTAGTTGATC ATTGGTACCC 
GACTGATCTT TCCAAAAGGG CCAGAATTCA CTCTGTTTTG GATTGGCATC 
ACACCAATTT ACGCCCTGGT GCAGCTGGAT ACGTTCTGAA TAGTGTACTA 
GGTCCAGCTC TCGGTCTTCC TCTGAATCCG AAAGCAGCTG CTGAAGCTGA 
GCAGTTACTA ACAAAGTCTC TGACCACTCT AGACACTTTT TGGCTTAAGG 
GCAATGCCAT GTTCTTGCTC GGAAGCAACC AACCATCTAT AGCTGATCTG 
AGCCTTGTAT GTGAACTAAC GCAGCTGCAG GTTTTGGATG ATAAAGATCG 
TCTTAGATTG CTCAGCCCTC ATAAAAATGT TGAACAATGG ATTGAGAATA 
CGAGAAAAGC GACGATGCCT CACTTTGATG AGGTCCATGA GGTCCTTTTC 
AGAGCCAAAG ATAGATGTCA GAAGCAGCGA GAGATGGCAA CCGCATCTAA 
ACCGGGTCCT CAATCTAAGA TTATCCAATT TAGTACTATT GGTGAGAAGA 
GTGATGATCC AAACCTCGTT CAAAACACAA CCGATCGTAG AAAACATAGA 
CGCAAATGGA GTCGAGCTGA AGATGCCATT CTTATTAGTG CTTGGTTAAA 
TACTAGCAAG GATCCAATTG TCGATAATGA ACATAAAGCA TGCGCTTTTT 
GGAAGAGAAT TGGTGCATAT TTTAACAATA GCGCTTCACT TGCAAATCTG 
CCAAAGCGAG AGCCGAGTCA CTGCAAGCAA AGATGGAGTA AACTTAACGA 
CAAAGTCTGC AAATTTGTTG GATGTTATGA TCAAGCTTTG AATCAAAGAA 
GTAGTGGTCA ATCTGAAGAT GATGTTTTCC AAGTTGCATA CCAAGTCTAC 
ACGAACAATT ACAAGAGTAA TTTTACACTT GAGCATGCAT GGAGGGAGCT 
CCGACACAGT AAAAAATGGT GTAGTTTGTA CCCCTTTGAA AATTCTAAGG 
TTGGTGGAAG CTCAAAGAGA ACAAAGTTGA ATAATGGAGA TCGTGTATAT 
TCTTCAAGCT CTAATCCGGA GAGTGTGCCT ATAGCTCTAG ATGAAGAGGA 
GCAAGTCATG GATCTTCCTC TTGGTGTGAA GTCATCGAAG CAGAAAGAGA 
AGAAAGTTGC TACTATTATA ACGATTGAAG AAAGGGAGGC CGATTCTGGA 
TCAAGACTTG AGAACTTGTG GGTACTAGAT GAAGAGGAGC AAGTTATGGA 
TCGTCCTCTT GGTGTGAAGT CATTAGAGCA AAAAGAGAAT AAAGTTTGCT 
CCTAAACCAA CGATTGAAGA AAGGGAGGCG GCCGATTCTC GATCAAGACT 
TGAGAACTTG TGGGCACTAA AGGAGAAAGA AGAAAGGGAG GCAGATTCCC 
GATCAAGACT TGAGAACTTG TGGGCACTGA AGGAGAAAGA CATAGAAGAG 
CAAAAGAAAC TAACAAGGAT GGAAGTCCTT AAAAGTCTTC TTGGAAGAAC 
AACTGATCAA CTTTCTGAAA AAGAAGACAT TTTGAAGAAC AAGCTCATTG 
ATGAGATGCT CTAATCTCTA TGTTCATCTC TGTATTTTAG CTATGTTTCA 
TTGTATTTAT CTCTGTATTT TCTCTAGGTT TATCTCACTA TCTATGTTCA 
ACAAAAAAA

Gene models with high sequence identity

  1. AT5G41220.1 [+] show detail - glutathione S-transferase THETA 3
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutathione S-transferase, N-terminal 0.0000000018
ProfileScan MYB-like 7.155
ProfileScan Glutathione S-transferase, N-terminal 20.14
ProfileScan Glutathione S-transferase/chloride channel, C-terminal 12.685
superfamily Thioredoxin-like fold 7.5e-23
superfamily Glutathione S-transferase, C-terminal-like 3.2e-19
Gene3D Thioredoxin fold 8.4e-20
Gene3D Glutathione S-transferase, C-terminal-like 5.6e-36
HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 2.1e-82
HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.1e-82

See the detailed result >

AT5G41220.1

Model type
Protein coding
Short Description
glutathione S-transferase THETA 3
Curator Summary
Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase THETA 3 (GSTT3); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 2 (TAIR:AT5G41240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-62-B01 introduced

  • F07312 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found