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  3. RAFL09-62-F11

RAFL09-62-F11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12358)

full reading [+] show sequence

Nucleotide sequence: RAFL09-62-F11 - full reading 
AGAGAGACAT TTCGCCATTA GATCCTCTTT TTTTTCTTCG TAGGTCGAAC 
GAAATTTTGT GTTTCGTTGA GGAGAAAATT GAGCCGTGTT TGTGTTGAGA 
TGTCTATGAT CGATGAGCCG TTGTACCCAA TCGCCGTACT TATAGACGAG 
TTAAAAAACG ATGATATTCA GCTAAGATTG AATTCCATCA GAAGGCTTTC 
TACGATCGCT CGTGCTCTTG GGGAAGAGAG GACTAGAAAG GAATTGATCC 
CTTTCCTTAG CGAAAACAAT GACGATGATG ATGAGGTTTT ATTAGCAATG 
GCTGAAGAAT TGGGTGTGTT TATTCCTTAT GTTGGTGGTG TTGAGTATGC 
ACATGTTCTT CTTCCACCTT TGGAAACTCT TTCGACTGTC GAAGAAACTT 
GTGTTAGGGA GAAAGCTGTT GAGTCGCTTT GTAGAGTTGG CTCTCAGATG 
AGGGAGAGTG ACTTGGTTGA TCATTTCATT TCGTTAGTTA AGCGACTTGC 
CGCTGGTGAG TGGTTCACAG CTAGAGTATC GGCTTGCGGT GTTTTCCATA 
TTGCATACCC GAGCGCGCCG GATATGTTGA AGACTGAGTT AAGATCGTTG 
TATACTCAGC TTTGTCAGGA TGATATGCCG ATGGTAAGGA GAGCTGCAGC 
AACTAATCTT GGGAAATTTG CTGCTACGGT TGAATCAGCG CATTTGAAGA 
CCGACGTTAT GTCCATGTTT GAGGATCTTA CTCAAGATGA TCAAGATTCT 
GTTAGATTAT TGGCCGTTGA GGGTTGTGCT GCTCTTGGGA AATTGTTGGA 
GCCTCAGGAT TGTGTCCAAC ACATTCTTCC CGTGATTGTT AATTTCTCGC 
AGGATAAGTC TTGGCGTGTG CGCTATATGG TTGCAAATCA ACTCTACGAG 
CTTTGTGAAG CCGTGGGACC TGAGCCTACT AGGACGGAGC TGGTGCCTGC 
ATATGTGCGC CTACTTCGTG ATAATGAAGC TGAAGTACGC ATAGCAGCTG 
CCGGAAAAGT TACAAAGTTT TGTCGGATTC TAAACCCTGA AATTGCTATC 
CAGCACATTC TCCCCTGTGT GAAGGAGCTA TCATCAGACT CTTCTCAGCA 
TGTCAGATCT GCATTGGCCT CAGTTATAAT GGGAATGGCT CCAGTCTTGG 
GTAAGGATGC AACAATTGAG CATCTCCTTC CAATCTTTCT TTCTCTATTG 
AAAGATGAGT TCCCGGATGT ACGCTTGAAC ATTATCAGCA AACTTGACCA 
AGTGAATCAG GTTATTGGGA TTGATCTACT ATCACAATCC TTGTTGCCAG 
CTATTGTAGA ACTTGCTGAA GATAGACACT GGAGAGTAAG ACTTGCTATA 
ATCGAGTATA TCCCTTTGTT GGCAAGTCAG TTAGGTGTTG GCTTCTTTGA 
CGATAAGCTT GGTGCTCTTT GCATGCAATG GTTACAAGAC AAGGTTCACT 
CAATCCGCGA TGCTGCTGCT AACAATCTCA AGCGGCTTGC TGAGGAATTT 
GGTCCTGAAT GGGCAATGCA ACATATAGTT CCTCAGGTTC TTGAGATGGT 
TAACAACCCT CACTATCTCT ACCGAATGAC CATTTTGCGT GCGGTGTCTC 
TTCTTGCACC TGTAATGGGC TCAGAGATTA CATGCTCTAA GCTCTTACCT 
GTAGTAATGA CTGCATCTAA AGACAGAGTT CCAAACATCA AATTCAACGT 
CGCTAAAGTA CTTCAATCCC TCATTCCAAT AGTTGATCAA TCGGTTGTGG 
AGAAGACGAT TCGTCCTGGG CTTGTGGAGC TAAGCGAGGA TCCAGATGTT 
GATGTCAGGT TTTTCGCAAA CCAAGCTCTA CAATCTATTG ACAATGTGAT 
GATGTCTAGC TAAAACCATT AGATCTTGTC TCTCTGCTTA TAATCGTTTT 
CTATTTGATT GAAAAAAAAA ACAAATCTCA AGACTTTTGT AACGTAGTAG 
TGGATTCTCG TCTTGTGTTT TTTATTACAC GCAAACTACT AGAGTGCCTC 
GGTACGGGTT TTGTCCATTG TCTTGCTACT AATGTGTTTA AAACTCTATG 
TTGATAACTA A

Gene models with high sequence identity

  1. AT3G25800.1 [+] show detail - protein phosphatase 2A subunit A2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Armadillo-type fold 3.5e-112
HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGUL 0
Gene3D Armadillo-like helical 4.1e-181
ProfileScan HEAT, type 2 9.815
ProfileScan HEAT, type 2 8.522
ProfileScan HEAT, type 2 9.927
ProfileScan HEAT, type 2 9.674
ProfileScan HEAT, type 2 13.693
ProfileScan HEAT, type 2 13.018
ProfileScan HEAT, type 2 12.316
ProfileScan HEAT, type 2 12.765
ProfileScan HEAT, type 2 11.669
ProfileScan HEAT, type 2 8.691
ProfileScan HEAT, type 2 9.871
ProfileScan HEAT, type 2 11.135
ProfileScan HEAT, type 2 10.77
HMMPfam HEAT 0.0007
HMMPfam HEAT 3.2e-05
HMMPfam HEAT 0.01
HMMPfam HEAT 0.0055
HMMPfam HEAT 0.0061
HMMPfam HEAT 0.0023
HMMPfam HEAT 0.014

See the detailed result >

AT3G25800.1

Model type
Protein coding
Short Description
protein phosphatase 2A subunit A2
Curator Summary
one of three genes encoding the protein phosphatase 2A regulatory subunit
Computational Description
protein phosphatase 2A subunit A2 (PP2AA2); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cadmium ion, regulation of phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A3 (TAIR:AT1G13320.3); Has 2834 Blast hits to 1736 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1458; Fungi - 417; Plants - 306; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-62-F11 introduced

  • F11026 - rosette leaf::dark green / cauline leaf::decreased size / stem::increased thickness / stem::abnormal / whole plant::decreased height / flower::abnormal

Mutant lines with disrupted or induced

2 mutant lines found